Reference data set: nitrogen

Input object: BP-0.m

Total number of forward reads: 12999682

Total number of reverse reads: 12999682

Number of mapped reads, forward: 4257

Number of mapped reads, reverse: 4222

Predicted average insert size: 361

Predicted average genome size: 12858168

Input object: BP-6m

Total number of forward reads: 15234525

Total number of reverse reads: 15234525

Number of mapped reads, forward: 10068

Number of mapped reads, reverse: 9933

Predicted average insert size: 434

Predicted average genome size: 5668148

Input object: BP-15m

Total number of forward reads: 13037903

Total number of reverse reads: 13037903

Number of mapped reads, forward: 8805

Number of mapped reads, reverse: 8850

Predicted average insert size: 396

Predicted average genome size: 5379877

Input object: BP-18m

Total number of forward reads: 12615487

Total number of reverse reads: 12615487

Number of mapped reads, forward: 9304

Number of mapped reads, reverse: 9191

Predicted average insert size: 400

Predicted average genome size: 5796576

Input object: BS-0m

Total number of forward reads: 15255718

Total number of reverse reads: 15255718

Number of mapped reads, forward: 10210

Number of mapped reads, reverse: 10135

Predicted average insert size: 478

Predicted average genome size: 6080185

Input object: BS-6m

Total number of forward reads: 12022077

Total number of reverse reads: 12022077

Number of mapped reads, forward: 9214

Number of mapped reads, reverse: 9123

Predicted average insert size: 494

Predicted average genome size: 5160005

Input object: BS-15

Total number of forward reads: 15992369

Total number of reverse reads: 15992369

Number of mapped reads, forward: 14929

Number of mapped reads, reverse: 14787

Predicted average insert size: 413

Predicted average genome size: 4937687

Input object: BS-18m

Total number of forward reads: 9976763

Total number of reverse reads: 9976763

Number of mapped reads, forward: 7705

Number of mapped reads, reverse: 7658

Predicted average insert size: 408

Predicted average genome size: 5317483

Input object: CB-0m

Total number of forward reads: 7238358

Total number of reverse reads: 7238358

Number of mapped reads, forward: 1221

Number of mapped reads, reverse: 1205

Predicted average insert size: 413

Predicted average genome size: 29739380

Input object: CB-6m

Total number of forward reads: 15844502

Total number of reverse reads: 15844502

Number of mapped reads, forward: 2507

Number of mapped reads, reverse: 2521

Predicted average insert size: 376

Predicted average genome size: 29518536

Input object: CB-15m

Total number of forward reads: 14032284

Total number of reverse reads: 14032284

Number of mapped reads, forward: 4134

Number of mapped reads, reverse: 4151

Predicted average insert size: 428

Predicted average genome size: 7538771

Input object: CB-18m

Total number of forward reads: 9198396

Total number of reverse reads: 9198396

Number of mapped reads, forward: 4590

Number of mapped reads, reverse: 4521

Predicted average insert size: 404

Predicted average genome size: 6657780

Functionefpkg Raw sequence count Amino acid identity %, average Description
NarG_NxrA 0.03990 24 95.85 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.01805 5 99.20 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.01417 2 100.00 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.02013 3 89.83 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.91129 1507 79.13 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.42006 106 78.40 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NirA 0.82115 252 77.63 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 3.34106 1403 80.14 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.62419 211 73.60 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.04157 11 82.17 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirS 0.00869 3 62.67 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirU 0.88342 249 78.53 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.00702 3 69.97 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfC 0.01408 2 67.45 nrfC; protein NrfC
NrfH 0.01689 2 91.30 nrfH; cytochrome c nitrite reductase small subunit
UreA 1.86029 207 84.89 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.59434 277 82.59 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.24490 964 87.97 ureC; urease subunit alpha [EC:3.5.1.5]
cNorB_qNor 0.01021 4 93.45 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.03098 4 79.38
Denitrification 0.06748 21 79.79
Nitrate assimilatory reduction 3.33135 1613 79.08
Nitrate dissimilatory reduction 0.09225 34 96.06
Nitrite assimilation 6.66982 2115 79.00
Urease 7.69954 1448 86.50
NasA NirS NrfH NirB NasB NarG_NxrA cNorB_qNor UreC UreB NirA NarJ NirD NrfC NarI UreA NirK NirU NarH_NxrB NosZ
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 2.911294 0.008687 0.016895 3.341060 0.420056 0.039895 0.010208 3.244902 2.594342 0.821152 0.020129 1.624188 0.014081 0.014171 1.860294 0.041565 0.883418 0.018052 0.007022
2 norank Unknown 0.007811 0.050607 0.010823 0.003299
3 superkingdom Bacteria 2.903483 0.008687 0.016895 3.341060 0.420056 0.039895 0.010208 3.170700 2.561678 0.817852 0.020129 1.624188 0.014081 0.014171 1.860294 0.041565 0.883418 0.018052 0.007022
4 phylum Cyanobacteria 0.016690 0.006718 0.009650 0.018165
5 order Synechococcales 0.003359 0.003687
6 family Synechococcaceae 0.003687
7 family Unclassified Synechococcales 0.003359
8 class Unclassified Cyanobacteria 0.016690 0.003359 0.009650 0.014478
9 phylum Proteobacteria 1.436310 0.008687 1.953420 0.363957 0.024861 0.005270 1.604825 1.595319 0.585489 0.013652 1.022569 0.014081 0.007052 1.303384 0.736086 0.007362
10 class Gammaproteobacteria 0.282176 0.244417 0.025268 0.018247 0.002626 0.314265 0.323113 0.006732 0.163802 0.014081 0.007052 0.128424 0.007362
11 order Xanthomonadales 0.011112 0.021967
12 family Rhodanobacteraceae 0.002281 0.021967
13 family Xanthomonadaceae 0.008830
14 order Cardiobacteriales 0.002626
15 family Cardiobacteriaceae 0.002626
16 genus Cardiobacterium 0.002626
17 order Methylococcales 0.004498
18 family Methylococcaceae 0.004498
19 order Oceanospirillales 0.006816
20 order Thiotrichales 0.011377
21 order Pseudomonadales 0.126525 0.163248 0.013285 0.256507 0.277132 0.072558 0.128424
22 family Pseudomonadaceae 0.112577 0.151171 0.004376 0.249945 0.277132 0.072558 0.128424
23 genus Pseudomonas 0.062988 0.122836 0.131742 0.207804 0.041296 0.105074
24 species Pseudomonas donghuensis 0.001647
25 species Pseudomonas rhizosphaerae 0.010566
26 species Unclassified Pseudomonas 0.061342 0.122836 0.131742 0.207804 0.030729 0.105074
27 genus Unclassified Pseudomonadaceae 0.049589 0.028335 0.004376 0.118204 0.069328 0.031263 0.023350
28 family Unclassified Pseudomonadales 0.013948 0.012077 0.008910 0.006562
29 order Enterobacterales 0.022229 0.048616 0.001541 0.014934 0.006769 0.057564 0.003681
30 family Erwiniaceae 0.039644 0.001541 0.004970 0.057564
31 genus Pantoea 0.001541 0.001541 0.001541
32 genus Erwinia 0.038103 0.001657 0.056024
33 species Erwinia billingiae 0.033340 0.001657 0.044819
34 species Unclassified Erwinia 0.004763 0.011205
35 genus Unclassified Erwiniaceae 0.003313
36 family Pectobacteriaceae 0.005901
37 genus Pectobacterium 0.001448
38 genus Unclassified Pectobacteriaceae 0.004453
39 family Morganellaceae 0.004743
40 genus Proteus 0.004743
41 family Enterobacteriaceae 0.006487
42 genus Kosakonia 0.001665
43 genus Unclassified Enterobacteriaceae 0.004821
44 family Unclassified Enterobacterales 0.009841 0.004229 0.009964 0.006769 0.003681
45 order Unclassified Gammaproteobacteria 0.117813 0.032554 0.010442 0.003313 0.044172 0.034604 0.006732 0.011712 0.014081 0.007052 0.003681
46 class Alphaproteobacteria 0.418090 0.644171 0.196036 0.420166 0.341751 0.360308 0.006920 0.339594 0.493317 0.693509
47 order Rhodospirillales 0.020411 0.002431 0.004536 0.033784 0.026721 0.006920 0.022186 0.105849
48 family Rhodospirillaceae 0.018153 0.002431 0.022186
49 genus Nitrospirillum 0.004516
50 genus Tistrella 0.002431
51 genus Unclassified Rhodospirillaceae 0.013636 0.022186
52 family Acetobacteraceae 0.023645 0.020043 0.006920 0.074079
53 genus Roseomonas 0.010021 0.014118
54 genus Acetobacter 0.006759
55 genus Unclassified Acetobacteraceae 0.016887 0.010021 0.006920 0.059961
56 family Unclassified Rhodospirillales 0.002258 0.004536 0.010138 0.006678 0.031770
57 order Rhodobacterales 0.002192 0.003379 0.011614 0.011675 0.003524
58 family Rhodobacteraceae 0.002192 0.011614 0.011675 0.003524
59 family Unclassified Rhodobacterales 0.003379
60 order Sphingomonadales 0.150569 0.192326 0.016851 0.229327 0.011675
61 family Sphingomonadaceae 0.136586 0.132334 0.010107 0.218451 0.011675
62 genus Sphingomonas 0.044276 0.040996 0.154099
63 species Sphingomonas taxi 0.004830 0.044152
64 species Sphingomonas panacis 0.010930
65 species Unclassified Sphingomonas 0.044276 0.036166 0.099017
66 genus Sphingobium 0.021967
67 genus Novosphingobium 0.001533 0.004700
68 genus Unclassified Sphingomonadaceae 0.090777 0.086638 0.010107 0.042385 0.011675
69 family Unclassified Sphingomonadales 0.013983 0.059992 0.006743 0.010876
70 order Caulobacterales 0.002245
71 family Caulobacteraceae 0.002245
72 order Rhizobiales 0.171368 0.201976 0.164354 0.167455 0.213012 0.277991 0.011261 0.208902 0.580612
73 family Methylobacteriaceae 0.114619 0.146271 0.117075 0.165070 0.193374 0.165070 0.227536
74 genus Methylobacterium 0.074036 0.128586 0.083621 0.120051 0.186896 0.120051 0.191964
75 species Methylobacterium sp. GXF4 0.011257 0.008667
76 species Unclassified Methylobacterium 0.062779 0.119919 0.083621 0.120051 0.186896 0.120051 0.191964
77 genus Unclassified Methylobacteriaceae 0.040583 0.017685 0.033454 0.045019 0.006478 0.045019 0.035572
78 family Methylocystaceae 0.001481 0.025226
79 genus Methylocystis 0.001481
80 genus Unclassified Methylocystaceae 0.025226
81 family Xanthobacteraceae 0.002460
82 genus Xanthobacter 0.002460
83 family Bradyrhizobiaceae 0.006766 0.021905 0.016246 0.021905 0.031974
84 genus Bradyrhizobium 0.002277
85 genus Bosea 0.015006 0.003232 0.015006
86 genus Unclassified Bradyrhizobiaceae 0.004489 0.006899 0.013014 0.006899 0.031974
87 family Hyphomicrobiaceae 0.002267 0.003374
88 genus Filomicrobium 0.002267
89 genus Unclassified Hyphomicrobiaceae 0.003374
90 family Beijerinckiaceae 0.008361 0.118231 0.007196
91 genus Methylocella 0.002787 0.034484
92 genus Unclassified Beijerinckiaceae 0.005574 0.083747 0.007196
93 family Phyllobacteriaceae 0.002133 0.006920 0.006920
94 genus Aminobacter 0.006920 0.006920
95 genus Mesorhizobium 0.002133
96 family Unclassified Rhizobiales 0.035740 0.081284 0.018083 0.047006 0.019117 0.068370 0.011261 0.015006 0.288681
97 order Unclassified Alphaproteobacteria 0.071306 0.247439 0.027146 0.198697 0.117124 0.055597 0.076820 0.261066 0.003524
98 class Betaproteobacteria 0.273441 0.424376 0.103989 0.001666 0.002645 0.314642 0.427727 0.342751 0.231281
99 order Neisseriales 0.003319 0.011038
100 family Neisseriaceae 0.003319 0.011038
101 genus Vitreoscilla 0.003319 0.011038
102 species Vitreoscilla filiformis 0.003319
103 species Unclassified Vitreoscilla 0.011038
104 order Nitrosomonadales 0.003033 0.002356
105 family Methylophilaceae 0.003033 0.002356
106 genus Methylophilus 0.002356
107 genus Unclassified Methylophilaceae 0.003033
108 order Burkholderiales 0.212076 0.224542 0.101751 0.001666 0.002645 0.217589 0.381271 0.277853 0.172906
109 family Burkholderiaceae 0.013412 0.002366 0.001666
110 genus Burkholderia 0.004495
111 genus Lautropia 0.001666
112 species Lautropia mirabilis 0.001666
113 genus Unclassified Burkholderiaceae 0.008918 0.002366
114 genus Rhizobacter 0.002387
115 family Alcaligenaceae 0.004584
116 genus Achromobacter 0.001557
117 genus Unclassified Alcaligenaceae 0.003027
118 family Oxalobacteraceae 0.011208 0.002366 0.033157 0.013559 0.022245 0.022200 0.023350
119 genus Massilia 0.015644 0.010823
120 species Massilia sp. WG5 0.002238
121 species Unclassified Massilia 0.013406 0.010823
122 genus Janthinobacterium 0.002366 0.011377
123 genus Unclassified Oxalobacteraceae 0.011208 0.017513 0.013559 0.022245 0.023350
124 family Comamonadaceae 0.068549 0.072428 0.096936 0.255507 0.129380 0.081724
125 genus Acidovorax 0.003359
126 genus Variovorax 0.002179 0.019191 0.162596 0.098367 0.011675
127 species Variovorax sp. CF313 0.032789
128 species Variovorax sp. PAMC 28711 0.081298
129 species Variovorax paradoxus 0.011614 0.011675
130 species Unclassified Variovorax 0.002179 0.019191 0.069684 0.065578
131 genus Unclassified Comamonadaceae 0.066370 0.053237 0.093577 0.092912 0.031014 0.070049
132 genus Leptothrix 0.002442
133 family Unclassified Burkholderiales 0.114322 0.142554 0.068594 0.002645 0.107095 0.103519 0.126272 0.067832
134 order Unclassified Betaproteobacteria 0.058332 0.197478 0.002238 0.093734 0.046456 0.053861 0.058374
135 class Deltaproteobacteria 0.014005 0.002426 0.006728 0.019395 0.010876 0.019395
136 order Myxococcales 0.011204 0.006534 0.010876 0.006534
137 family Archangiaceae 0.008403
138 family Unclassified Myxococcales 0.002801 0.006534 0.010876 0.006534
139 order Unclassified Deltaproteobacteria 0.002801 0.002426 0.006728 0.012861 0.012861
140 class Unclassified Proteobacteria 0.448598 0.008687 0.638029 0.038664 0.004948 0.549024 0.483333 0.225181 0.165546 0.430967 0.042577
141 phylum Firmicutes 0.001549 0.012866 0.007119
142 class Negativicutes 0.007119
143 order Selenomonadales 0.007119
144 family Selenomonadaceae 0.007119
145 class Bacilli 0.001549 0.003334
146 order Bacillales 0.001549
147 family Paenibacillaceae 0.001549
148 order Unclassified Bacilli 0.003334
149 class Unclassified Firmicutes 0.009533
150 phylum Deinococcus-Thermus 0.002374
151 class Deinococci 0.002374
152 order Deinococcales 0.002374
153 family Deinococcaceae 0.002374
154 phylum Actinobacteria 0.364332 0.215848 0.042579 0.015034 0.004938 0.090940 0.099049 0.006477 0.221005 0.070049 0.002183 0.010689
155 class Actinobacteria 0.309998 0.122379 0.038203 0.013331 0.004938 0.088251 0.084925 0.006477 0.116173 0.046700 0.002183 0.010689
156 order Actinomycetales 0.003313 0.002557 0.006477
157 family Actinomycetaceae 0.003313 0.002557 0.006477
158 genus Actinomyces 0.002557 0.006477
159 genus Unclassified Actinomycetaceae 0.003313
160 order Actinopolysporales 0.003880
161 family Actinopolysporaceae 0.003880
162 order Kineosporiales 0.010944 0.006951 0.030836 0.011319
163 family Kineosporiaceae 0.007817 0.004634 0.030836 0.011319
164 genus Kineococcus 0.006254 0.004634 0.017131 0.011319
165 species Kineococcus radiotolerans 0.003426
166 species Unclassified Kineococcus 0.006254 0.004634 0.013705 0.011319
167 genus Unclassified Kineosporiaceae 0.001563 0.013705
168 family Unclassified Kineosporiales 0.003127 0.002317
169 order Micrococcales 0.024647 0.033276 0.001678 0.010154 0.030572 0.031114
170 family Micrococcaceae 0.002716 0.011973 0.001678 0.010668
171 genus Arthrobacter 0.009713
172 genus Unclassified Micrococcaceae 0.002716 0.002261 0.001678 0.010668
173 family Intrasporangiaceae 0.010823
174 family Microbacteriaceae 0.009154 0.020934
175 genus Agromyces 0.002319
176 genus Cryobacterium 0.002196
177 genus Unclassified Microbacteriaceae 0.004639 0.020934
178 family Unclassified Micrococcales 0.011109 0.012148 0.010154 0.019904 0.010180
179 order Corynebacteriales 0.010677 0.004862 0.003867 0.002381 0.006759 0.021402 0.011736 0.011675
180 family Corynebacteriaceae 0.002381 0.009908
181 genus Corynebacterium 0.002381
182 genus Unclassified Corynebacteriaceae 0.009908
183 family Mycobacteriaceae 0.001540 0.003379
184 genus Mycobacterium 0.003379
185 genus Unclassified Mycobacteriaceae 0.001540
186 family Nocardiaceae 0.001513 0.003867 0.011494 0.011736 0.011675
187 genus Nocardia 0.003867
188 genus Rhodococcus 0.011736
189 genus Unclassified Nocardiaceae 0.001513 0.011494 0.011675
190 family Gordoniaceae 0.004542
191 family Unclassified Corynebacteriales 0.003082 0.004862 0.003379
192 order Propionibacteriales 0.007581 0.003333 0.002183 0.003724
193 family Propionibacteriaceae 0.004814 0.003333 0.002183 0.003724
194 genus Microlunatus 0.002407
195 genus Unclassified Propionibacteriaceae 0.002407 0.003333 0.002183 0.003724
196 family Nocardioidaceae 0.002766
197 genus Actinopolymorpha 0.002766
198 order Pseudonocardiales 0.002896
199 family Pseudonocardiaceae 0.002896
200 order Streptomycetales 0.043050 0.013528 0.003395
201 family Streptomycetaceae 0.034706 0.004564
202 genus Streptomyces 0.017136
203 genus Unclassified Streptomycetaceae 0.017570 0.004564
204 family Unclassified Streptomycetales 0.008344 0.008963 0.003395
205 order Streptosporangiales 0.007021
206 family Nocardiopsaceae 0.005532
207 family Unclassified Streptosporangiales 0.001488
208 order Frankiales 0.002614 0.002263
209 family Frankiaceae 0.002614 0.002263
210 order Unclassified Actinobacteria 0.200568 0.075028 0.016928 0.005007 0.037108 0.032951 0.062004 0.035025 0.006965
211 class Rubrobacteria 0.001703
212 order Rubrobacterales 0.001703
213 class Unclassified Actinobacteria 0.054334 0.093469 0.004376 0.002689 0.014124 0.104832 0.023350
214 phylum Planctomycetes 0.121615 0.025273 0.104928 0.003410
215 class Planctomycetia 0.028836 0.012636 0.028836 0.003410
216 order Planctomycetales 0.018606 0.006418 0.018606 0.003410
217 family Planctomycetaceae 0.016539 0.016539
218 genus Gimesia 0.002067 0.002067
219 genus Unclassified Planctomycetaceae 0.014472 0.014472
220 family Isosphaeraceae 0.006418
221 family Unclassified Planctomycetales 0.002067 0.002067 0.003410
222 order Unclassified Planctomycetia 0.010230 0.006219 0.010230
223 class Unclassified Planctomycetes 0.092779 0.012636 0.076092
224 phylum Spirochaetes 0.004783
225 class Spirochaetia 0.002392
226 class Unclassified Spirochaetes 0.002392
227 phylum Lentisphaerae 0.019216
228 class Lentisphaeria 0.002402
229 class Unclassified Lentisphaerae 0.016814
230 phylum Acidobacteria 0.061815 0.064545 0.010823 0.029689
231 class Acidobacteriia 0.059180 0.051626 0.023100
232 order Acidobacteriales 0.056493 0.048412 0.023100
233 family Acidobacteriaceae 0.043063 0.038730 0.009883
234 genus Terriglobus 0.024175 0.019365 0.003294
235 species Terriglobus roseus 0.002686
236 species Unclassified Terriglobus 0.021489 0.019365 0.003294
237 genus Unclassified Acidobacteriaceae 0.018888 0.019365 0.006589
238 family Unclassified Acidobacteriales 0.013430 0.009682 0.013217
239 order Unclassified Acidobacteriia 0.002686 0.003213
240 class Unclassified Acidobacteria 0.002635 0.012919 0.010823 0.006589
241 phylum Armatimonadetes 0.005702 0.025636
242 class Fimbriimonadia 0.005702 0.025636
243 order Fimbriimonadales 0.005702 0.025636
244 family Fimbriimonadaceae 0.002851
245 genus Fimbriimonas 0.002851
246 family Unclassified Fimbriimonadales 0.002851 0.025636
247 phylum Verrucomicrobia 0.009366 0.019258 0.003334 0.003159 0.003480
248 class Verrucomicrobiae 0.003480
249 order Verrucomicrobiales 0.003480
250 class Opitutae 0.009366 0.003159
251 order Opitutales 0.009366 0.003159
252 family Opitutaceae 0.009366 0.003159
253 genus Opitutus 0.009366
254 genus Unclassified Opitutaceae 0.003159
255 class Unclassified Verrucomicrobia 0.019258 0.003334
256 phylum Bacteroidetes 0.101818 0.007529 0.120155 0.094153 0.120080 0.053047 0.120080 0.023329 0.002981
257 class Flavobacteriia 0.007529 0.023329 0.002981
258 order Flavobacteriales 0.007529 0.023329 0.002981
259 family Flavobacteriaceae 0.007529 0.023329 0.002981
260 genus Capnocytophaga 0.007529 0.015541 0.002981
261 genus Flavobacterium 0.007787
262 class Sphingobacteriia 0.003521 0.009652 0.010823
263 order Sphingobacteriales 0.003521 0.007235 0.010823
264 family Sphingobacteriaceae 0.001760 0.007235 0.010823
265 genus Mucilaginibacter 0.004835
266 genus Pedobacter 0.002399 0.010823
267 genus Unclassified Sphingobacteriaceae 0.001760
268 family Unclassified Sphingobacteriales 0.001761
269 order Unclassified Sphingobacteriia 0.002418
270 class Chitinophagia 0.001750 0.002394
271 class Cytophagia 0.010556 0.019245 0.073979 0.120080 0.010719 0.120080
272 order Cytophagales 0.008797 0.004814 0.053805 0.100067 0.010719 0.100067
273 family Hymenobacteraceae 0.002407 0.023548 0.100067 0.100067
274 genus Hymenobacter 0.006728 0.060040 0.060040
275 genus Unclassified Hymenobacteraceae 0.002407 0.016820 0.040027 0.040027
276 family Flammeovirgaceae 0.001759
277 family Cytophagaceae 0.010719
278 genus Dyadobacter 0.010719
279 family Unclassified Cytophagales 0.007039 0.002407 0.030256
280 order Unclassified Cytophagia 0.001759 0.014430 0.020174 0.020013 0.020013
281 class Unclassified Bacteroidetes 0.085990 0.088863 0.020174 0.031505
282 phylum Unclassified Bacteria 0.931956 0.867701 0.013520 1.357863 0.737579 0.121222 0.186179 0.366780 0.016054 0.110753 0.004041
283 superkingdom Archaea 0.003379 0.010227
284 phylum Euryarchaeota 0.003379 0.010227
285 class Halobacteria 0.010227
286 order Halobacteriales 0.010227
287 family Haloarculaceae 0.010227
288 class Unclassified Euryarchaeota 0.003379
289 superkingdom Unclassified 0.020215 0.011614
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.00787 9 89.49 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.00612 2 82.95 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.01254 5 91.16 Cytochrome c-type protein NapC
NapD 0.00318 1 70.80 Periplasmic nitrate reductase component NapD
NapF 0.01450 5 59.06 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NarG_NxrA 0.01343 22 95.52 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.01299 10 95.91 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.02171 9 88.29 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.02149 9 82.72 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.65618 3566 82.23 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.49155 330 80.27 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00130 1 89.80 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00135 1 100.00 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.00985 5 95.12 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NirA 0.43115 367 77.18 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.69435 3102 88.13 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.72120 588 82.13 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.06832 49 71.45 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirS 0.00411 4 69.38 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirT 0.00261 1 80.90 Cytochrome c-type protein NirT
NirU 0.37829 296 82.62 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.00629 7 76.29 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00451 3 82.53 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
UreA 2.15904 680 88.79 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.11610 687 85.00 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.04763 2526 90.88 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.00483 2 56.80 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.00522 5 86.70 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00451 3 82.53
Denitrification 0.09137 68 72.65
Nitrate assimilatory reduction 3.14774 3896 82.07
Nitrate dissimilatory reduction 0.11383 72 88.79
Nitrite assimilation 5.22499 4353 86.02
Nitrogen fixation 0.01250 7 95.06
Urease 7.32277 3893 89.48
NapD NapC NarJ NasA NirT NifH_AnfH_VnfH NapA NarH_NxrB NirS NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.003178 0.012537 2.149141e-02 2.656185e+00 0.002611 0.009852 0.007871 0.012994 0.004114 0.001346 2.116101 0.014501 1.721196 2.159044 0.068317 0.004826 0.006288 2.694350 4.915514e-01 0.013428 0.005215 3.047629 0.431154 0.006119 0.004514 2.171451e-02 0.001304 0.378291
2 norank Unknown 1.546015e-03 0.006801 0.035050
3 superkingdom Bacteria 0.003178 0.012537 2.149141e-02 2.653605e+00 0.002611 0.009852 0.007871 0.012994 0.004114 0.001346 2.109301 0.014501 1.721196 2.159044 0.068317 0.004826 0.006288 2.694350 4.915514e-01 0.013428 0.005215 3.007755 0.428618 0.006119 0.004514 2.171451e-02 0.001304 0.378291
4 phylum Cyanobacteria 1.645875e-02 0.001707 0.002360
5 order Oscillatoriales 2.918714e-03
6 family Cyanothecaceae 9.615410e-04
7 family Unclassified Oscillatoriales 1.957173e-03
8 class Unclassified Cyanobacteria 1.354003e-02 0.001707 0.002360
9 phylum Proteobacteria 0.003178 0.012537 1.684155e-02 1.846623e+00 0.002611 0.009852 0.006972 0.011781 1.254723 0.014501 1.249828 1.135268 0.026608 0.005553 1.967950 4.279407e-01 0.012816 0.004273 1.630323 0.240379 0.006119 0.001442 1.939609e-02 0.001304 0.283712
10 class Gammaproteobacteria 0.002619 4.662947e-03 1.092205e-01 0.000872 0.001316 0.097523 0.040713 0.081575 0.114298 9.772913e-03 0.001816 0.104846 7.302857e-03
11 order Chromatiales 0.001212
12 family Ectothiorhodospiraceae 0.001212
13 order Xanthomonadales 1.629743e-03 0.001773
14 family Rhodanobacteraceae 8.148717e-04
15 family Unclassified Xanthomonadales 8.148717e-04 0.001773
16 order Methylococcales 1.097351e-03
17 family Methylococcaceae 5.486754e-04
18 genus Methylomicrobium 5.486754e-04
19 family Unclassified Methylococcales 5.486754e-04
20 order Oceanospirillales 1.478225e-03
21 order Pasteurellales 0.002619
22 order Cellvibrionales 2.186386e-03 0.001723
23 family Cellvibrionaceae 2.186386e-03 0.001723
24 genus Cellvibrio 0.001723
25 genus Unclassified Cellvibrionaceae 2.186386e-03
26 order Pseudomonadales 4.992776e-02 0.000872 0.097523 0.023108 0.081575 0.084480 3.133242e-03 0.100083
27 family Pseudomonadaceae 4.284389e-02 0.000872 0.097523 0.017306 0.081575 0.075884 1.588846e-03 0.097666
28 genus Pseudomonas 2.046697e-02 0.067041 0.008731 0.078132 0.035071 1.588846e-03 0.038854
29 species Pseudomonas rhizosphaerae 0.001711
30 species Unclassified Pseudomonas 2.046697e-02 0.067041 0.008731 0.078132 0.033360 1.588846e-03 0.038854
31 genus Unclassified Pseudomonadaceae 2.237692e-02 0.000872 0.030482 0.008575 0.003443 0.040813 0.058812
32 family Unclassified Pseudomonadales 7.083871e-03 0.005802 0.008597 1.544395e-03 0.002417
33 order Enterobacterales 2.331474e-03 1.174289e-02 0.001316 0.006004 0.003841 2.226398e-03 0.000605 4.868571e-03
34 family Erwiniaceae 2.331474e-03 0.003792 0.001427 5.636139e-04 2.434286e-03
35 genus Pantoea 0.000564 0.000564 5.636139e-04
36 genus Erwinia 2.331474e-03 0.003228 0.000863 2.434286e-03
37 species Erwinia billingiae 0.003228 0.000863
38 species Unclassified Erwinia 2.331474e-03 2.434286e-03
39 family Pectobacteriaceae 2.229155e-03
40 genus Pectobacterium 5.439894e-04
41 genus Unclassified Pectobacteriaceae 1.685165e-03
42 family Yersiniaceae 4.946021e-03 0.001103 0.001304 5.530731e-04 0.000605
43 genus Rahnella 2.471368e-03 0.000605
44 genus Unclassified Yersiniaceae 2.474653e-03 0.001103 0.001304 5.530731e-04
45 family Enterobacteriaceae 2.083133e-03
46 family Unclassified Enterobacterales 2.484586e-03 0.001316 0.001110 0.001110 1.109711e-03 2.434286e-03
47 order Unclassified Gammaproteobacteria 2.331474e-03 4.263641e-02 0.011601 0.022481 2.935048e-03 0.001211 0.003550 2.434286e-03
48 class Oligoflexia 0.001442
49 order Bdellovibrionales 0.001442
50 family Bdellovibrionaceae 0.001442
51 class Acidithiobacillia 7.937804e-04
52 order Acidithiobacillales 7.937804e-04
53 class Alphaproteobacteria 0.003178 0.009918 8.151243e-01 0.007848 0.003479 0.519055 0.014501 0.669749 0.558806 0.013094 0.003347 0.840992 2.362234e-01 0.663772 0.193779 0.006119 0.274779
54 order Rhodospirillales 2.423153e-03 0.011657 0.002640 0.009708 0.002400
55 family Rhodospirillaceae 0.008763 0.002640
56 family Acetobacteraceae 2.423153e-03 0.009708 0.001200
57 family Unclassified Rhodospirillales 0.002894 0.001200
58 order Rhodobacterales 0.003414 0.010328 0.005940
59 family Rhodobacteraceae 0.003414 0.010328 0.005940
60 genus Rhodobacter 0.001210
61 genus Paracoccus 0.003443
62 species Paracoccus sp. TRP 0.003443
63 genus Unclassified Rhodobacteraceae 0.003414 0.006885 0.004730
64 order Sphingomonadales 4.565758e-01 0.046115 0.560473 0.017214 0.009807 0.529297 0.066567
65 family Erythrobacteraceae 0.000878
66 genus Erythrobacter 0.000878
67 family Sphingomonadaceae 4.056540e-01 0.036244 0.461075 0.017214 0.005884 0.388262 0.056884
68 genus Sphingomonas 1.205931e-01 0.190656 0.079125
69 species Sphingomonas taxi 1.696525e-03 0.037851 0.004376
70 species Sphingomonas panacis 4.258765e-03 0.021748 0.005201
71 species Sphingomonas hengshuiensis 8.430807e-04
72 species Unclassified Sphingomonas 1.137948e-01 0.131057 0.069548
73 genus Sphingorhabdus 0.002614
74 genus Sphingobium 1.093522e-02 0.036925 0.003443 0.000872
75 species Sphingobium sp. RAC03 0.009251
76 species Unclassified Sphingobium 1.093522e-02 0.027673 0.003443 0.000872
77 genus Novosphingobium 5.868396e-03 0.013266 0.036222 0.010328 0.013058 0.026627
78 species Novosphingobium resinovorum 8.371144e-04 0.000866
79 species Novosphingobium sp. Rr 2-17 0.003386 0.009682
80 species Unclassified Novosphingobium 5.031281e-03 0.009880 0.036222 0.010328 0.012192 0.016944
81 genus Unclassified Sphingomonadaceae 2.682573e-01 0.022978 0.197273 0.003443 0.005884 0.292592 0.030258
82 family Unclassified Sphingomonadales 5.092170e-02 0.009870 0.099398 0.003923 0.140157 0.009682
83 order Caulobacterales 1.876389e-02 0.009228 0.013289
84 family Caulobacteraceae 1.876389e-02 0.006145 0.009749
85 genus Caulobacter 1.385282e-02 0.003061 0.005324
86 species Caulobacter sp. K31 2.444615e-03
87 species Unclassified Caulobacter 1.140820e-02 0.003061 0.005324
88 genus Unclassified Caulobacteraceae 4.911075e-03 0.003084 0.004425
89 family Unclassified Caulobacterales 0.003084 0.003540
90 order Rhizobiales 0.003178 0.009918 1.753604e-01 0.002609 0.290578 0.009511 0.235695 0.002319 0.011569 2.218840e-01 0.337313 0.183282 0.006119 0.270971
91 family Methylobacteriaceae 1.551314e-02 0.020626 0.020626 2.039440e-02 0.021614 0.026712 0.031715
92 genus Methylobacterium 1.143864e-02 0.018048 0.018048 1.573128e-02 0.016814 0.026712 0.026636
93 species Methylobacterium sp. 77 0.001166
94 species Unclassified Methylobacterium 1.143864e-02 0.018048 0.018048 1.573128e-02 0.016814 0.025546 0.026636
95 genus Unclassified Methylobacteriaceae 4.074499e-03 0.002578 0.002578 4.663115e-03 0.004799 0.005079
96 family Chelatococcaceae 8.229706e-04
97 genus Chelatococcus 8.229706e-04
98 family Aurantimonadaceae 0.003626
99 genus Aurantimonas 0.002417
100 genus Unclassified Aurantimonadaceae 0.001209
101 family Methylocystaceae 2.168833e-03 1.556004e-03
102 genus Methylocystis 5.422084e-04
103 genus Methylopila 1.556004e-03
104 genus Unclassified Methylocystaceae 1.626625e-03
105 family Bradyrhizobiaceae 0.003178 0.005002 8.152975e-02 0.001739 0.091769 0.083282 1.511717e-01 0.078501 0.093935 0.003054 0.173098
106 genus Afipia 8.116766e-04 1.594967e-03 0.001184 0.001268
107 genus Rhodopseudomonas 0.002531 0.016989 0.002417
108 genus Bradyrhizobium 8.173437e-03 3.971969e-02 0.003631 0.039112 0.029303
109 species Bradyrhizobium diazoefficiens 0.001119
110 species Unclassified Bradyrhizobium 8.173437e-03 3.971969e-02 0.003631 0.037994 0.029303
111 genus Bosea 0.005157 0.005157 0.001161 0.001289
112 genus Unclassified Bradyrhizobiaceae 0.003178 0.002471 7.254463e-02 0.001739 0.069623 0.078125 1.098570e-01 0.072453 0.052477 0.003054 0.141238
113 family Hyphomicrobiaceae 1.657554e-03 0.001780 1.273597e-03 0.001210 0.001161 0.001252
114 genus Devosia 0.001210
115 genus Hyphomicrobium 0.001161 0.001252
116 genus Unclassified Hyphomicrobiaceae 1.657554e-03 0.001780 1.273597e-03
117 family Beijerinckiaceae 1.607352e-03
118 family Phyllobacteriaceae 8.563590e-03 0.013657
119 genus Hoeflea 0.003414
120 genus Chelativorans 0.003414
121 genus Mesorhizobium 7.738159e-03 0.003414
122 species Mesorhizobium sp. WSM1497 7.752021e-04
123 species Unclassified Mesorhizobium 6.962956e-03 0.003414
124 genus Unclassified Phyllobacteriaceae 8.254317e-04 0.003414
125 family Rhizobiaceae 9.869027e-03 0.102430 0.006357 0.000890 0.038781
126 genus Agrobacterium 0.006829
127 genus Rhizobium 8.279076e-04 0.064873 0.001209
128 species Rhizobium sp. 2MFCol3.1 0.020486
129 species Unclassified Rhizobium 8.279076e-04 0.044386 0.001209
130 genus Unclassified Rhizobiaceae 9.041119e-03 0.030729 0.006357 0.000890 0.037572
131 family Unclassified Rhizobiales 0.004916 5.523553e-02 0.000870 0.062096 0.003154 0.131786 0.002319 0.008898 4.588101e-02 0.193582 0.061474 0.003065 0.064906
132 order Unclassified Alphaproteobacteria 1.620011e-01 0.007848 0.000870 0.178947 0.002844 0.090537 0.295570 0.000968 0.003347 0.284196 1.433937e-02 0.244244 0.008097 0.003807
133 class Betaproteobacteria 1.217861e-02 5.024742e-01 0.002611 0.006541 0.382395 0.401655 0.236432 0.008215 0.602869 1.409696e-01 0.009193 0.461739 1.209323e-02 0.002587
134 order Neisseriales 0.001191 2.413004e-03
135 family Chromobacteriaceae 2.413004e-03
136 family Unclassified Neisseriales 0.001191
137 order Rhodocyclales 8.053610e-04 0.002611 0.003154 0.000893
138 family Zoogloeaceae 0.002611
139 family Rhodocyclaceae 0.000893
140 genus Azospira 0.000893
141 family Unclassified Rhodocyclales 8.053610e-04 0.003154
142 order Nitrosomonadales 5.165883e-03 0.009131 0.003332 0.002358 0.006257 0.006060
143 family Sterolibacteriaceae 0.002358 0.002358
144 genus Methyloversatilis 0.002358 0.002358
145 family Nitrosomonadaceae 0.001212
146 family Methylophilaceae 5.165883e-03 0.006773 0.006257 0.001214
147 genus Methylotenera 1.621770e-03 0.000897
148 genus Unclassified Methylophilaceae 3.544114e-03 0.006773 0.005360 0.001214
149 family Unclassified Nitrosomonadales 0.003332 0.003634
150 order Burkholderiales 1.217861e-02 3.737248e-01 0.006541 0.323777 0.326129 0.140166 0.008215 0.414312 1.348372e-01 0.007966 0.345956 4.840113e-03
151 family Burkholderiaceae 9.671367e-03 0.001680 1.567788e-03
152 genus Burkholderia 5.475869e-04
153 genus Ralstonia 1.606036e-03
154 genus Unclassified Burkholderiaceae 7.517744e-03 0.001680 1.567788e-03
155 genus Rhizobacter 2.397429e-03 0.002595 0.001207
156 species Rhizobacter gummiphilus 0.001207
157 species Unclassified Rhizobacter 2.397429e-03 0.002595
158 genus Rubrivivax 0.003589
159 genus Methylibium 7.930202e-04
160 genus Thiomonas 0.000886 0.001193
161 family Alcaligenaceae 1.097756e-03
162 genus Mitsuaria 0.003414
163 family Oxalobacteraceae 7.302857e-03 3.491395e-02 0.003925 0.030311 0.017937 0.006885 0.004124 0.029288 5.236171e-02 0.007966 0.066849 4.840113e-03
164 genus Massilia 1.645941e-03 0.000863 1.496932e-03 0.001216
165 genus Janthinobacterium 4.868571e-03 9.822365e-03 0.014604 0.005968 0.002723 0.005153 9.490882e-03 0.001227 0.001216 2.420057e-03
166 genus Herminiimonas 0.000866
167 genus Duganella 1.609157e-03 0.000859 1.570762e-03 0.001212
168 species Duganella zoogloeoides 8.045785e-04 1.570762e-03 0.001212
169 species Unclassified Duganella 8.045785e-04 0.000859
170 genus Herbaspirillum 0.000852 1.567788e-03
171 genus Unclassified Oxalobacteraceae 2.434286e-03 2.183649e-02 0.003925 0.015708 0.011969 0.006885 0.001401 0.020695 3.823534e-02 0.006739 0.063206 2.420057e-03
172 family Comamonadaceae 1.592782e-01 0.155248 0.158986 0.070323 0.001368 0.134268 1.573748e-03 0.149082
173 genus Acidovorax 7.810518e-04 0.003414 0.002973 0.002352
174 genus Ramlibacter 0.003253
175 genus Caldimonas 0.000890
176 genus Rhodoferax 7.922614e-03 0.013446 0.012154 0.009526 0.010845
177 species Rhodoferax saidenbachensis 0.003203
178 species Rhodoferax koreense 7.922614e-04 0.010243 0.000866 0.009640
179 species Unclassified Rhodoferax 7.130353e-03 0.012154 0.008660 0.001205
180 genus Curvibacter 1.573748e-03
181 genus Comamonas 5.432756e-04
182 genus Variovorax 3.159981e-03 0.030729 0.060638 0.012789 0.044599 0.003615
183 species Variovorax sp. PAMC 28711 0.006214
184 species Variovorax paradoxus 0.003414 0.009346 0.000888
185 species Unclassified Variovorax 3.159981e-03 0.027315 0.054424 0.003443 0.043710 0.003615
186 genus Hydrogenophaga 0.003359
187 genus Polaromonas 8.537413e-03 0.013657 0.006490 0.001368 0.001789 0.004820
188 species Polaromonas sp. CF318 0.001368
189 species Polaromonas naphthalenivorans 0.001205
190 species Polaromonas sp. JS666 0.000895
191 species Unclassified Polaromonas 8.537413e-03 0.013657 0.006490 0.000894 0.003615
192 genus Limnohabitans 0.001205
193 genus Unclassified Comamonadaceae 1.383339e-01 0.090642 0.076730 0.054280 0.077464 0.126245
194 genus Leptothrix 0.001769
195 genus Roseateles 0.000871
196 family Unclassified Burkholderiales 4.875749e-03 1.655730e-01 0.002616 0.134804 0.149206 0.062957 0.002723 0.242955 7.933391e-02 0.124036
197 order Unclassified Betaproteobacteria 1.227782e-01 0.049487 0.072194 0.090753 0.181407 6.132414e-03 0.001227 0.108531 4.840113e-03 0.002587
198 class Deltaproteobacteria 1.001065e-03 0.027065 0.027065 0.001783 6.973639e-03 0.013282
199 order Myxococcales 0.020305 0.020305 0.001783 6.973639e-03 0.007242
200 family Sandaracinaceae 0.000892 2.764011e-03
201 genus Sandaracinus 0.000892
202 genus Unclassified Sandaracinaceae 2.764011e-03
203 family Anaeromyxobacteraceae 0.002225 0.002225
204 genus Anaeromyxobacter 0.002225 0.002225
205 family Labilitrichaceae 0.004535 0.004535
206 family Archangiaceae 0.002225 0.002225
207 family Polyangiaceae 4.209628e-03
208 genus Sorangium 2.796972e-03
209 genus Unclassified Polyangiaceae 1.412656e-03
210 family Unclassified Myxococcales 0.011319 0.011319 0.000891 8.673617e-19 0.007242
211 order Unclassified Deltaproteobacteria 1.001065e-03 0.006760 0.006760 0.006039
212 class Unclassified Proteobacteria 4.180092e-01 0.002004 0.002621 0.003923 0.228685 0.137711 0.231391 0.005298 0.002206 0.408007 3.400112e-02 0.001807 0.004273 0.386685 0.046600 0.001304 0.006347
213 phylum Firmicutes 2.087954e-03 0.005841 0.003590 1.955476e-03 0.007218 0.017763
214 class Bacilli 0.005841 0.000899 1.955476e-03 0.002403 0.001262
215 order Bacillales 0.005841 0.000899
216 family Paenibacillaceae 0.005841
217 family Alicyclobacillaceae 0.000899
218 order Unclassified Bacilli 1.955476e-03 0.002403 0.001262
219 class Unclassified Firmicutes 2.087954e-03 0.002691 0.004815 0.016501
220 phylum Deinococcus-Thermus 0.002413 0.002413 0.001198
221 class Deinococci 0.002413 0.002413
222 class Unclassified Deinococcus-Thermus 0.001198
223 phylum Chloroflexi 0.004114
224 class Chloroflexia 0.001028
225 order Chloroflexales 0.001028
226 family Roseiflexaceae 0.001028
227 class Unclassified Chloroflexi 0.003085
228 phylum Actinobacteria 4.649855e-03 2.045299e-01 0.001214 0.238084 0.235193 0.284615 0.275997 4.272951e-02 0.000612 0.429694 2.318418e-03
229 class Thermoleophilia 0.005125 0.005125 0.002410
230 order Solirubrobacterales 0.005125 0.005125
231 family Conexibacteraceae 0.005125 0.005125
232 order Unclassified Thermoleophilia 0.002410
233 class Actinobacteria 2.324927e-03 1.856547e-01 0.001214 0.184168 0.176598 0.227643 0.207215 3.879088e-02 0.000612 0.341871
234 order Geodermatophilales 8.295665e-04 0.003245
235 family Geodermatophilaceae 8.295665e-04
236 family Unclassified Geodermatophilales 0.003245
237 order Nakamurellales 1.742949e-03 0.006885 0.001727 0.001214
238 family Nakamurellaceae 1.742949e-03 0.003443 0.001727
239 genus Nakamurella 8.714746e-04 0.003443 0.001727
240 species Nakamurella multipartita 0.003443 0.000863
241 species Unclassified Nakamurella 8.714746e-04 0.000863
242 genus Unclassified Nakamurellaceae 8.714746e-04
243 family Unclassified Nakamurellales 0.003443 0.001214
244 order Kineosporiales 0.000841
245 family Kineosporiaceae 0.000841
246 order Micrococcales 5.539444e-03 0.006185 0.006123 0.017185 0.004240 3.828243e-03 0.007281
247 family Micrococcaceae 0.003253
248 genus Pseudarthrobacter 0.003253
249 family Cellulomonadaceae 5.486754e-04
250 family Promicromonosporaceae 1.893210e-03
251 family Microbacteriaceae 1.030979e-03 0.003038 0.006885 1.297546e-03 0.004866
252 genus Microbacterium 1.030979e-03 0.006885 1.297546e-03 0.002431
253 genus Unclassified Microbacteriaceae 0.003038 0.002435
254 family Unclassified Micrococcales 2.066579e-03 0.003147 0.002870 0.010300 0.004240 2.530697e-03 0.002415
255 order Corynebacteriales 3.474046e-02 0.025954 0.057008 0.029050 0.072395 2.759405e-03 0.041008
256 family Mycobacteriaceae 1.384134e-02 0.027206 0.018153 0.013306
257 genus Mycobacterium 8.621362e-03 0.015144 0.011194 0.006034
258 genus Hoyosella 0.000864
259 genus Unclassified Mycobacteriaceae 5.219975e-03 0.012062 0.006095 0.007272
260 family Nocardiaceae 8.321405e-03 0.010186 0.017358 0.010186 0.026358 2.759405e-03 0.010829
261 genus Nocardia 0.001752 2.759405e-03
262 genus Rhodococcus 3.887090e-03 0.010186 0.017358 0.010186 0.020230 0.006016
263 genus Unclassified Nocardiaceae 4.434315e-03 0.004376 0.004813
264 family Gordoniaceae 1.117043e-03 0.000883
265 genus Gordonia 0.000883
266 genus Unclassified Gordoniaceae 1.117043e-03
267 family Unclassified Corynebacteriales 1.146068e-02 0.015768 0.012444 0.018864 0.027002 0.016872
268 order Micromonosporales 4.058514e-03 0.003016 0.006507 0.000881 0.002419
269 family Micromonosporaceae 3.077609e-03 0.003016 0.006507 0.000881 0.001205
270 genus Actinoplanes 2.051739e-03 0.006507
271 genus Unclassified Micromonosporaceae 1.025870e-03 0.003016 0.000881 0.001205
272 family Unclassified Micromonosporales 9.809049e-04 0.001214
273 order Propionibacteriales 4.572474e-02 0.003203 0.079433 0.003443 0.014553 1.176940e-02 0.003658
274 family Propionibacteriaceae 1.744785e-03
275 family Nocardioidaceae 3.796932e-02 0.003203 0.046935 0.003443 0.013709 8.419295e-03
276 genus Kribbella 0.003107
277 genus Nocardioides 3.124054e-03 0.002812 0.004344 2.879347e-03
278 genus Aeromicrobium 2.981567e-03 0.003407 1.388960e-03
279 genus Pimelobacter 2.093233e-03
280 genus Unclassified Nocardioidaceae 2.977047e-02 0.003203 0.041017 0.003443 0.005958 4.150988e-03
281 family Unclassified Propionibacteriales 6.010630e-03 0.032498 0.000844 3.350102e-03 0.003658
282 order Pseudonocardiales 6.052054e-03 1.415070e-03 0.001226
283 family Pseudonocardiaceae 5.036253e-03 0.001226
284 genus Lentzea 0.001226
285 genus Pseudonocardia 3.032524e-03
286 genus Actinomycetospora 1.015802e-03
287 genus Actinoalloteichus 9.879268e-04
288 family Unclassified Pseudonocardiales 1.015802e-03 1.415070e-03
289 order Streptomycetales 4.265092e-03 0.006988 0.006988 2.872974e-03 0.001214
290 family Streptomycetaceae 2.016753e-03 0.002338 0.002338
291 genus Streptomyces 5.355454e-04
292 genus Unclassified Streptomycetaceae 1.481208e-03 0.002338 0.002338
293 family Unclassified Streptomycetales 2.248338e-03 0.004650 0.004650 2.872974e-03 0.001214
294 order Streptosporangiales 1.426387e-03 2.782587e-03
295 family Streptosporangiaceae 1.426387e-03
296 genus Streptosporangium 5.447051e-04
297 genus Unclassified Streptosporangiaceae 8.816818e-04
298 family Nocardiopsaceae 2.782587e-03
299 order Frankiales 0.000836 0.001350
300 family Frankiaceae 0.000836
301 family Unclassified Frankiales 0.001350
302 order Unclassified Actinobacteria 2.324927e-03 8.127548e-02 0.001214 0.135576 0.027527 0.164091 0.111743 1.336320e-02 0.000612 0.282500
303 class Acidimicrobiia 0.006718
304 class Unclassified Actinobacteria 2.324927e-03 1.887516e-02 0.048791 0.058595 0.045130 0.068783 3.938629e-03 0.085413 2.318418e-03
305 phylum Planctomycetes 8.669199e-03 0.003741 0.007525 0.004497 0.013903
306 class Planctomycetia 6.730315e-03 0.001485 0.001485 0.003361 0.011431
307 order Planctomycetales 5.756333e-03 0.001485 0.001485 0.002226 0.011431
308 family Planctomycetaceae 3.848504e-03 0.001485 0.001485 0.001143 0.001302
309 genus Schlesneria 9.570953e-04
310 genus Unclassified Planctomycetaceae 2.891408e-03 0.001485 0.001485 0.001143 0.001302
311 family Isosphaeraceae 9.429267e-04 0.001082
312 family Gemmataceae 0.001270
313 family Unclassified Planctomycetales 9.649024e-04 0.008859
314 order Unclassified Planctomycetia 9.739822e-04 0.001136
315 class Unclassified Planctomycetes 1.938885e-03 0.002256 0.006040 0.001136 0.002472
316 phylum Spirochaetes 0.002831 0.004826 0.002601
317 class Spirochaetia 0.000867
318 family Leptospiraceae 0.000867
319 class Unclassified Spirochaetes 0.002831 0.004826 0.001734
320 phylum Lentisphaerae 0.000871
321 phylum Nitrospirae 0.001364
322 phylum Acidobacteria 2.939233e-03 0.002711 0.006973 0.003503
323 class Acidobacteriia 0.006973 0.003503
324 order Acidobacteriales 0.006973 0.003503
325 family Acidobacteriaceae 0.005810 0.003503
326 genus Granulicella 0.001163
327 species Granulicella mallensis 0.001163
328 genus Unclassified Acidobacteriaceae 0.004648 0.003503
329 family Unclassified Acidobacteriales 0.001163
330 class Solibacteres 2.939233e-03 0.000904
331 order Solibacterales 1.959489e-03 0.000904
332 family Solibacteraceae 0.000904
333 genus Candidatus Solibacter 0.000904
334 family Unclassified Solibacterales 1.959489e-03
335 order Unclassified Solibacteres 9.797443e-04
336 class Unclassified Acidobacteria 0.001808
337 phylum Armatimonadetes 0.004010 0.001251
338 class Chthonomonadetes 0.001251
339 order Chthonomonadales 0.001251
340 family Chthonomonadaceae 0.001251
341 class Fimbriimonadia 0.004010
342 phylum Verrucomicrobia 1.156778e-02 0.034602 0.031331 0.003936 0.067737 0.064621 0.041789
343 class Spartobacteria 1.810370e-03 0.003359 0.001312 0.003599 0.004799 0.004690
344 order Chthoniobacterales 1.206913e-03 0.001312 0.003599 0.004799 0.004690
345 family Chthoniobacteraceae 1.206913e-03 0.003599 0.003599 0.003518
346 genus Chthoniobacter 6.034567e-04 0.002400 0.002400 0.001173
347 genus Unclassified Chthoniobacteraceae 6.034567e-04 0.001200 0.001200 0.002345
348 family Unclassified Chthoniobacterales 0.001312 0.001200 0.001173
349 order Unclassified Spartobacteria 6.034567e-04 0.003359
350 class Verrucomicrobiae 6.873551e-03 0.009609 0.010328 0.007220 0.008220 0.020779
351 order Verrucomicrobiales 3.942300e-03 0.009609 0.010328 0.006016 0.007046 0.017153
352 family Verrucomicrobia subdivision 3 0.002349
353 family Rubritaleaceae 0.002494
354 family Verrucomicrobiaceae 2.956725e-03 0.009609 0.010328 0.006016 0.005871 0.004950
355 genus Verrucomicrobium 0.003443 0.002349 0.001237
356 genus Unclassified Verrucomicrobiaceae 2.956725e-03 0.009609 0.006885 0.006016 0.003523 0.003712
357 family Unclassified Verrucomicrobiales 9.855750e-04 0.001174 0.007361
358 order Unclassified Verrucomicrobiae 2.931251e-03 0.001203 0.001174 0.003626
359 class Opitutae 9.472414e-04 0.005904 0.008260 0.010344 0.010392
360 order Opitutales 9.472414e-04 0.005904 0.007064 0.007959 0.007996
361 family Opitutaceae 9.472414e-04 0.005904 0.002354 0.005687 0.007996
362 genus Opitutus 9.472414e-04
363 genus Lacunisphaera 0.005904
364 species Opitutaceae bacterium TAV5 0.001136
365 genus Unclassified Opitutaceae 0.002354 0.004552 0.007996
366 family Unclassified Opitutales 0.004710 0.002271
367 order Puniceicoccales 0.001196 0.001193 0.002396
368 family Puniceicoccaceae 0.001196 0.001193 0.001198
369 genus Coraliomargarita 0.001196
370 genus Unclassified Puniceicoccaceae 0.001193 0.001198
371 family Unclassified Puniceicoccales 0.001198
372 order Unclassified Opitutae 0.001193
373 class Unclassified Verrucomicrobia 1.936617e-03 0.015730 0.021003 0.002624 0.048658 0.041258 0.005928
374 phylum Bacteroidetes 2.389946e-01 0.073130 0.170416 0.124241 0.011210 0.240833 0.078194 0.001682 0.006689
375 order Bacteroidetes Order II. Incertae sedis 0.002586
376 family Rhodothermaceae 0.002586
377 class Flavobacteriia 4.151162e-02 0.019854 0.009812 0.030453 0.001203
378 order Flavobacteriales 4.151162e-02 0.019854 0.008377 0.029583 0.001203
379 family Flavobacteriaceae 3.958020e-02 0.019854 0.008377 0.027843 0.001203
380 genus Flavobacterium 3.315111e-02 0.019854 0.008377 0.026104
381 species Flavobacterium sp. CF136 6.433072e-04 0.008492
382 species Flavobacterium gilvum 0.001377
383 species Unclassified Flavobacterium 3.250781e-02 0.011362 0.007000 0.026104
384 genus Unclassified Flavobacteriaceae 6.429086e-03 0.001739 0.001203
385 family Unclassified Flavobacteriales 1.931422e-03 0.001739
386 order Unclassified Flavobacteriia 0.001435 0.000871
387 class Sphingobacteriia 3.213044e-03 0.005740 0.054833 0.010328 0.001398 0.024443 0.009626
388 order Sphingobacteriales 1.928426e-03 0.005740 0.054833 0.010328 0.001398 0.018340 0.008423
389 family Sphingobacteriaceae 1.928426e-03 0.005740 0.048998 0.010328 0.001398 0.013967 0.008423
390 genus Sphingobacterium 0.006122
391 genus Mucilaginibacter 1.284618e-03 0.006885 0.002627
392 genus Pedobacter 0.018388 0.002622
393 species Pedobacter sp. BAL39 0.003061
394 species Unclassified Pedobacter 0.015327 0.002622
395 genus Unclassified Sphingobacteriaceae 6.438074e-04 0.005740 0.024488 0.003443 0.001398 0.008718 0.008423
396 family Unclassified Sphingobacteriales 0.005835 0.004373
397 order Unclassified Sphingobacteriia 1.284618e-03 0.006103 0.001203
398 class Chitinophagia 2.677043e-02 0.008670 0.014482 0.010328 0.019978 0.003610
399 order Chitinophagales 2.104038e-02 0.008670 0.014482 0.010328 0.015629 0.003610
400 family Chitinophagaceae 1.720783e-02 0.008670 0.011671 0.010328 0.010422 0.003610
401 genus Niastella 6.286550e-04 0.003038 0.001747 0.001203
402 genus Niabella 1.275712e-03
403 genus Segetibacter 1.916521e-03
404 genus Filimonas 0.002812
405 genus Chitinophaga 6.354088e-04 0.005821
406 genus Unclassified Chitinophagaceae 1.275153e-02 0.008670 0.010328 0.008676 0.002407
407 family Unclassified Chitinophagales 3.832551e-03 0.002812 0.005207
408 order Unclassified Chitinophagia 5.730055e-03 0.004348
409 class Bacteroidia 0.001682
410 order Bacteroidales 0.001682
411 class Cytophagia 1.084559e-01 0.041615 0.069182 0.048500 0.095389 0.027728
412 order Cytophagales 9.510848e-02 0.041615 0.060133 0.048500 0.086715 0.025321
413 family Hymenobacteraceae 6.423092e-04 0.034679 0.034679 0.010861
414 genus Rufibacter 6.423092e-04
415 genus Hymenobacter 0.018496 0.018496 0.004827
416 species Hymenobacter sp. PAMC 26628 0.002312 0.002312
417 species Unclassified Hymenobacter 0.016184 0.016184 0.004827
418 genus Unclassified Hymenobacteraceae 0.016184 0.016184 0.006034
419 family Cytophagaceae 8.564481e-02 0.054101 0.065011 0.007220
420 genus Spirosoma 6.164859e-03 0.002605 0.006016
421 genus Dyadobacter 1.143729e-02 0.018098 0.021653
422 species Dyadobacter fermentans 6.473306e-04
423 species Unclassified Dyadobacter 1.078996e-02 0.018098 0.021653
424 genus Rudanella 6.229794e-04
425 genus Fibrisoma 6.310505e-04
426 genus Unclassified Cytophagaceae 6.678863e-02 0.036003 0.040753 0.001203
427 family Unclassified Cytophagales 8.821362e-03 0.006936 0.006033 0.013821 0.021704 0.007241
428 order Unclassified Cytophagia 1.334741e-02 0.009049 0.008674 0.002407
429 class Unclassified Bacteroidetes 5.904358e-02 0.017105 0.012065 0.055084 0.070570 0.036027 0.004102
430 phylum Unclassified Bacteria 3.469447e-18 3.217350e-01 0.000899 0.001346 0.500507 0.055177 0.581175 0.025199 0.000735 0.190566 1.892580e-02 0.000942 0.794589 0.089577 0.001389 3.469447e-18 0.028696
431 superkingdom Archaea 1.033552e-03
432 phylum Euryarchaeota 1.033552e-03
433 superkingdom Unclassified 4.440892e-16 0.004824 0.002536
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.03370 34 93.94 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.02532 7 91.79 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.03482 12 92.58 Cytochrome c-type protein NapC
NapE 0.01681 3 73.77 Periplasmic nitrate reductase component NapE
NapF 0.02065 6 70.65 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NapG 0.00525 2 95.45 Ferredoxin-type protein NapG (periplasmic nitrate reductase)
NapH 0.00228 1 95.90 Polyferredoxin NapH (periplasmic nitrate reductase)
NarG_NxrA 0.06703 98 97.14 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.06270 42 96.46 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.06756 24 96.67 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.02988 11 91.22 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.62523 3094 84.70 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.48957 321 83.40 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00748 5 91.28 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00771 5 90.96 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.01156 5 93.82 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.00596 4 90.73 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.22024 166 78.81 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.69942 2762 90.03 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.86035 503 85.54 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.29043 178 88.03 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirU 0.21359 149 83.75 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.01265 11 85.99 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00464 3 77.47 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
NrfH 0.01293 4 81.80 nrfH; cytochrome c nitrite reductase small subunit
UreA 1.90873 446 90.58 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 1.98188 470 86.69 ureB; urease subunit beta [EC:3.5.1.5]
UreC 2.61804 1907 92.94 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.00782 2 56.65 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.05222 45 85.48 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.01757 7 79.94
Denitrification 0.36311 236 87.18
Nitrate assimilatory reduction 3.11480 3415 84.58
Nitrate dissimilatory reduction 0.36599 240 94.89
Nitrite assimilation 4.99361 3580 88.62
Nitrogen fixation 0.03271 19 91.75
Urease 6.50865 2823 91.53
NapC NarJ NasA NapG NapH NifH_AnfH_VnfH NarH_NxrB NapA NifK_AnfK_VnfK NrfH NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapE NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.034821 0.029880 2.625227 0.005246 0.00228 0.011560 0.062701 0.033702 0.005963 0.012928 0.007707 1.981882 0.020649 1.860351 1.908732 0.290427 0.007821 0.012646 2.699418 0.489572 6.702907e-02 0.052220 2.618040 0.220244 0.016806 2.531538e-02 0.004640 0.067560 0.007482 0.213593
2 norank Unknown 0.001241 0.010961 0.004568 0.008186
3 superkingdom Bacteria 0.034821 0.029880 2.623986 0.005246 0.00228 0.011560 0.062701 0.033702 0.005963 0.012928 0.007707 1.958481 0.020649 1.860351 1.904164 0.290427 0.007821 0.012646 2.699418 0.489572 6.702907e-02 0.052220 2.607105 0.216006 0.016806 2.531538e-02 0.004640 0.067560 0.007482 0.213593
4 phylum Cyanobacteria 0.004326 0.004214 0.000987
5 phylum Proteobacteria 0.034821 0.029880 1.834895 0.005246 0.00228 0.011560 0.058458 0.032629 0.004476 0.004655 1.499584 0.020649 1.423502 1.284289 0.047464 0.005417 2.069747 0.439766 6.359504e-02 0.019760 1.844683 0.135285 0.016806 2.531538e-02 0.002994 0.067560 0.004510 0.162318
6 class Gammaproteobacteria 0.003007 0.026995 0.160853 0.005246 0.00228 0.050961 0.007926 0.161210 0.007035 0.197740 0.135245 0.001534 0.251007 0.049497 4.227212e-02 0.203343 1.103155e-02 0.056344
7 order Methylococcales 0.000617
8 family Methylococcaceae 0.000617
9 order Oceanospirillales 0.004332 0.007215
10 family Halomonadaceae 0.004332 0.003607
11 family Unclassified Oceanospirillales 0.003607
12 order Aeromonadales 0.000961
13 family Aeromonadaceae 0.000961
14 genus Aeromonas 0.000961
15 order Cellvibrionales 0.000612 0.004353 0.002924
16 family Cellvibrionaceae 0.000612 0.004353 0.002924
17 genus Cellvibrio 0.000612 0.004353 0.002924
18 order Nevskiales 0.000913 0.001459 0.001534 0.001930 0.001459
19 family Sinobacteraceae 0.000913 0.001534 0.001930
20 genus Hydrocarboniphaga 0.001930
21 genus Unclassified Sinobacteraceae 0.000913 0.001534
22 family Unclassified Nevskiales 0.001459 0.001459
23 order Pseudomonadales 0.074150 0.000987 0.156878 0.066163 0.135245 0.103028 0.005421 0.189579
24 family Pseudomonadaceae 0.066941 0.000987 0.156878 0.053702 0.130677 0.095168 0.003614 0.177144
25 genus Pseudomonas 0.033382 0.000987 0.116079 0.028805 0.094133 0.073788 0.003614 0.101458
26 species Pseudomonas sp. GM80 0.000918 0.004523
27 species Pseudomonas donghuensis 0.000678
28 species Unclassified Pseudomonas 0.031786 0.000987 0.111556 0.028805 0.094133 0.073788 0.003614 0.101458
29 genus Unclassified Pseudomonadaceae 0.033558 0.040799 0.024897 0.036544 0.021380 0.075685
30 family Unclassified Pseudomonadales 0.007210 0.012462 0.004568 0.007860 0.001807 0.012435
31 order Enterobacterales 0.003007 0.026995 0.037758 0.005246 0.00228 0.043503 0.001986 0.007035 0.104453 0.101069 0.028065 3.613181e-02 0.001370 1.103155e-02 0.050706
32 family Erwiniaceae 0.008098 0.001902 0.002999 0.000993 0.003578 0.028149 0.020797 0.005704 6.135642e-03 0.005646
33 genus Pantoea 0.001902 0.000993 0.003578 0.016987 0.005730 0.003805
34 genus Erwinia 0.005399 0.001499 0.008788 0.012693 4.772166e-03 0.005646
35 species Erwinia billingiae 0.005399 0.001499 0.008788 0.008788 3.408690e-03 0.005646
36 species Unclassified Erwinia 0.003906 1.363476e-03
37 genus Unclassified Erwiniaceae 0.002699 0.001499 0.002374 0.002374 0.001900 1.363476e-03
38 family Pectobacteriaceae 0.001885
39 genus Pectobacterium 0.000611
40 genus Unclassified Pectobacteriaceae 0.001274
41 family Yersiniaceae 0.003007 0.013497 0.020489 0.005246 0.00228 0.012053 0.000993 0.003457 0.065139 0.054103 0.016657 1.021853e-02 0.033776
42 genus Rahnella 0.013497 0.011174 0.007533 0.060579 0.047367 0.012954 7.493588e-03 0.033776
43 species Rahnella aquatilis 0.001862
44 species Unclassified Rahnella 0.013497 0.009311 0.007533 0.060579 0.047367 0.012954 7.493588e-03 0.033776
45 genus Serratia 0.003007 0.002623 0.003457 0.000971
46 species Serratia fonticola 0.002623 0.003457
47 species Unclassified Serratia 0.003007 0.000971
48 genus Unclassified Yersiniaceae 0.009315 0.002623 0.00228 0.004520 0.000993 0.004561 0.005765 0.003703 2.724941e-03
49 family Enterobacteriaceae 0.002844
50 family Unclassified Enterobacterales 0.005399 0.010638 0.028451 0.011165 0.026169 0.005704 1.977763e-02 0.001370 1.103155e-02 0.011284
51 order Unclassified Gammaproteobacteria 0.046803 0.007459 0.004953 0.021312 0.041094 0.007336 6.140318e-03 0.012394 0.005638
52 class Alphaproteobacteria 0.020119 0.754648 0.009234 0.003939 0.001502 0.003041 0.593884 0.013614 0.632339 0.575986 0.015357 0.002116 0.849866 0.130869 6.862955e-04 0.002705 0.766974 0.101072 0.010386 1.077426e-02 0.001478 0.157984
53 order Rhodospirillales 0.000926 0.004546 0.010294 0.001003 0.001840 0.008329 0.002726 0.002873
54 family Rhodospirillaceae 0.000926 0.010294 0.001003
55 family Acetobacteraceae 0.004546 0.005554 0.002726 0.001436
56 genus Roseomonas 0.001436
57 genus Unclassified Acetobacteraceae 0.004546 0.005554 0.002726
58 family Unclassified Rhodospirillales 0.001840 0.002776 0.001436
59 order Rhodobacterales 0.004568 0.002654
60 family Rhodobacteraceae 0.004568 0.002654
61 order Sphingomonadales 0.407890 0.120946 0.485842 0.045680 0.009030 0.467318 0.074324
62 family Sphingomonadaceae 0.370372 0.112029 0.473310 0.045680 0.006773 0.360949 0.068819
63 genus Sphingomonas 0.066213 0.103173 0.002258 0.042294
64 species Sphingomonas taxi 0.000959 0.002970
65 species Sphingomonas panacis 0.002890 0.008584 0.002942
66 species Sphingomonas hengshuiensis 0.000953
67 species Unclassified Sphingomonas 0.061411 0.094588 0.002258 0.036382
68 genus Sphingobium 0.023288 0.094057 0.011752 0.002753
69 species Sphingobium yanoikuyae 0.000951
70 species Sphingobium sp. RAC03 0.012817
71 species Unclassified Sphingobium 0.022337 0.081240 0.011752 0.002753
72 genus Novosphingobium 0.013250 0.067387 0.096457 0.031976 0.035293 0.030281
73 species Novosphingobium resinovorum 0.001893 0.004332
74 species Novosphingobium sp. Rr 2-17 0.004523 0.004568 0.004129
75 species Unclassified Novosphingobium 0.011357 0.062864 0.092125 0.027408 0.035293 0.026152
76 genus Unclassified Sphingomonadaceae 0.267621 0.044642 0.179623 0.013704 0.004515 0.271610 0.035785
77 family Unclassified Sphingomonadales 0.037518 0.008918 0.012532 0.002258 0.106369 0.005506
78 order Caulobacterales 0.030519 0.017111 0.027045
79 family Caulobacteraceae 0.027738 0.012858 0.020032
80 genus Caulobacter 0.012910 0.012858 0.010021
81 species Caulobacter sp. K31 0.001004
82 species Unclassified Caulobacter 0.012910 0.012858 0.009017
83 genus Unclassified Caulobacteraceae 0.014828 0.010011
84 family Unclassified Caulobacterales 0.002781 0.004253 0.007013
85 order Rhizobiales 0.011732 0.190057 0.002326 0.001971 0.001534 0.341885 0.073741 0.248604 0.004069 0.094573 0.125379 0.001679 0.415178 0.095731 0.010386 7.182842e-03 0.001478 0.155111
86 family Methylobacteriaceae 0.009194 0.008992 0.008992 0.018102 0.006821 0.007920 0.017423
87 genus Methylobacterium 0.007340 0.008992 0.008992 0.014459 0.005457 0.007920 0.015971
88 genus Unclassified Methylobacteriaceae 0.001855 0.003643 0.001364 0.001452
89 family Aurantimonadaceae 0.000675 0.009621
90 genus Aurantimonas 0.006872
91 genus Martelella 0.000675
92 genus Unclassified Aurantimonadaceae 0.002749
93 family Methylocystaceae 0.003068
94 genus Methylocystis 0.001220
95 genus Unclassified Methylocystaceae 0.001847
96 family Xanthobacteraceae 0.002997 0.002997
97 genus Azorhizobium 0.002997 0.002997
98 family Bradyrhizobiaceae 0.011732 0.060823 0.001971 0.062767 0.064302 0.002137 0.001003 0.072754 0.070066 0.061314 7.182842e-03 0.097167
99 genus Rhodopseudomonas 0.000925 0.018116 0.003607 0.001374 0.001443
100 species Rhodopseudomonas palustris 0.004546
101 species Unclassified Rhodopseudomonas 0.000925 0.013571 0.003607 0.001374 0.001443
102 genus Bradyrhizobium 0.009232 0.016354 0.001378 0.026317 0.017414
103 genus Bosea 0.002997 0.002997 0.001811 0.003964 0.002937
104 genus Unclassified Bradyrhizobiaceae 0.011732 0.050666 0.001971 0.041654 0.061305 0.002137 0.001003 0.050982 0.067314 0.031033 7.182842e-03 0.075373
105 family Hyphomicrobiaceae 0.000944 0.003022 0.003657 0.001443
106 genus Pelagibacterium 0.001007
107 genus Unclassified Hyphomicrobiaceae 0.000944 0.002015 0.003657 0.001443
108 family Beijerinckiaceae 0.001009
109 genus Methylocella 0.001009
110 family Phyllobacteriaceae 0.004461
111 genus Mesorhizobium 0.001857
112 genus Unclassified Phyllobacteriaceae 0.002605
113 family Bartonellaceae 0.004568
114 genus Bartonella 0.004568
115 family Rhizobiaceae 0.063352 0.181822 0.051976 0.042257 0.063252
116 genus Neorhizobium 0.000876 0.001006
117 genus Agrobacterium 0.000936 0.009091 0.001007
118 genus Rhizobium 0.001872 0.059092 0.012799 0.002012
119 species Rhizobium sp. 2MFCol3.1 0.009091
120 species Unclassified Rhizobium 0.001872 0.050001 0.012799 0.002012
121 genus Unclassified Rhizobiaceae 0.059668 0.113639 0.039178 0.038231 0.063252
122 family Unclassified Rhizobiales 0.047540 0.002326 0.001534 0.085307 0.021764 0.167745 0.001932 0.047282 0.030866 0.001679 0.265418 0.026496 0.010386 0.001478 0.039078
123 order Unclassified Alphaproteobacteria 0.008387 0.125256 0.006908 0.001968 0.001502 0.001507 0.126507 0.003320 0.055646 0.277134 0.002258 0.002116 0.259927 0.003650 6.862955e-04 0.001026 0.266489 0.002615 3.591421e-03
124 class Betaproteobacteria 0.008792 0.002885 0.537881 0.004483 0.009921 0.466525 0.528547 0.277111 0.012401 0.001230 0.598494 0.222044 1.174609e-02 0.005321 0.517037 0.006420 3.509569e-03 0.005604
125 order Neisseriales 0.000917
126 family Neisseriaceae 0.000917
127 genus Vitreoscilla 0.000917
128 order Rhodocyclales 0.006420
129 family Zoogloeaceae 0.006420
130 genus Azoarcus 0.006420
131 order Nitrosomonadales 0.016737 0.013570 0.009003 0.013704 0.023237 0.009664
132 family Methylophilaceae 0.015819 0.013570 0.009003 0.013704 0.021208 0.009664
133 genus Methylotenera 0.000909 0.009136 0.001004
134 genus Methylovorus 0.000918 0.004142
135 genus Unclassified Methylophilaceae 0.013991 0.013570 0.009003 0.004568 0.020204 0.005522
136 family Unclassified Nitrosomonadales 0.000918 0.002029
137 order Burkholderiales 0.008792 0.002885 0.413720 0.004483 0.009921 0.372997 0.434806 0.172763 0.012401 0.427761 0.214873 9.675392e-03 0.002099 0.386491 3.509569e-03 0.002798
138 family Burkholderiaceae 0.013431 0.009091 0.008564 0.009655
139 genus Cupriavidus 0.000952
140 genus Burkholderia 0.004546
141 genus Ralstonia 0.000910 0.002910
142 genus Unclassified Burkholderiaceae 0.012521 0.004546 0.008564 0.005793
143 genus Rhizobacter 0.002745
144 species Rhizobacter gummiphilus 0.001372
145 species Unclassified Rhizobacter 0.001372
146 family Oxalobacteraceae 0.002885 0.109539 0.004483 0.061604 0.080509 0.022840 0.009281 0.080250 0.095113 8.292526e-03 0.102229 0.002798
147 genus Massilia 0.004636 0.008830 0.006848 0.003420 0.001383
148 genus Collimonas 0.000908
149 genus Janthinobacterium 0.013794 0.008747 0.009136 0.007823 0.010889 6.909144e-04 0.013826 0.002798
150 species Janthinobacterium sp. HH01 0.009136 0.002920 0.001383
151 species Unclassified Janthinobacterium 0.013794 0.008747 0.004903 0.010889 6.909144e-04 0.012443 0.002798
152 genus Herminiimonas 0.002682 0.004493 0.003918
153 species Herminiimonas arsenicoxydans 0.001799 0.000980
154 species Unclassified Herminiimonas 0.000883 0.004493 0.002939
155 genus Duganella 0.005455 0.002914 0.003593 0.002757
156 species Duganella zoogloeoides 0.003637 0.000971 0.001797 0.001378
157 species Unclassified Duganella 0.001818 0.001943 0.001797 0.001378
158 genus Herbaspirillum 0.001824
159 species Herbaspirillum hiltneri 0.000910
160 species Unclassified Herbaspirillum 0.000914
161 genus Unclassified Oxalobacteraceae 0.002885 0.080241 0.004483 0.044026 0.080509 0.013704 0.004788 0.058747 0.077210 7.601612e-03 0.084264
162 family Comamonadaceae 0.002931 0.129572 0.006945 0.144725 0.150913 0.050248 0.126729 0.003586 0.150290 3.509569e-03
163 genus Acidovorax 0.002931 0.002609 0.005953 0.004546 0.004176 0.002954 0.003586 0.004111 3.509569e-03
164 species Acidovorax sp. CF316 0.001370
165 species Acidovorax sp. MR-S7 0.002976 3.509569e-03
166 species Unclassified Acidovorax 0.002931 0.002609 0.002976 0.004546 0.004176 0.002954 0.003586 0.002741
167 genus Rhodoferax 0.003580 0.004546 0.033424 0.006857 0.008222
168 species Rhodoferax saidenbachensis 0.004013
169 species Rhodoferax koreense 0.000895 0.008466 0.002741
170 species Unclassified Rhodoferax 0.002685 0.004546 0.020945 0.006857 0.005481
171 genus Curvibacter 0.000883
172 genus Variovorax 0.005358 0.040910 0.037313 0.009136 0.028903 0.005461
173 species Variovorax sp. PAMC 28711 0.004546 0.001370
174 species Unclassified Variovorax 0.005358 0.036364 0.037313 0.009136 0.028903 0.004091
175 genus Polaromonas 0.013031 0.004546 0.006071 0.008222
176 species Polaromonas naphthalenivorans 0.002741
177 species Unclassified Polaromonas 0.013031 0.004546 0.006071 0.005481
178 genus Limnohabitans 0.004063
179 genus Unclassified Comamonadaceae 0.104110 0.000992 0.090178 0.076001 0.041112 0.081944 0.120212
180 genus Leptothrix 0.001001
181 genus Roseateles 0.001370
182 family Unclassified Burkholderiales 0.005861 0.161178 0.002976 0.157578 0.194819 0.099674 0.003120 0.210126 0.116174 1.382866e-03 0.002099 0.129857
183 order Unclassified Betaproteobacteria 0.106507 0.079958 0.084739 0.090644 0.001230 0.147496 0.007171 2.070702e-03 0.003222 0.120882 0.002806
184 class Deltaproteobacteria 0.015693 0.015693 0.003155 0.004117 0.002994
185 order Myxococcales 0.007716 0.007716 0.001579 0.001372 0.002994
186 family Anaeromyxobacteraceae 0.002994
187 family Polyangiaceae 0.002572 0.002572 0.001579
188 family Unclassified Myxococcales 0.005144 0.005144 0.001372
189 order Unclassified Deltaproteobacteria 0.007977 0.007977 0.001576 0.002745
190 class Unclassified Proteobacteria 0.002903 0.381512 0.002326 0.003013 0.010843 0.002974 0.001615 0.262272 0.064875 0.280255 0.018172 0.002071 0.370380 0.034202 8.890526e-03 0.011733 0.353212 0.034213 3.469447e-18 0.005612 0.003032 0.004334
191 phylum Firmicutes 0.002236 0.002724 0.001436
192 class Bacilli 0.002236
193 class Unclassified Firmicutes 0.002724 0.001436
194 phylum Chloroflexi 0.001366
195 class Ktedonobacteria 0.001366
196 order Ktedonobacterales 0.001366
197 family Ktedonobacteraceae 0.001366
198 phylum Actinobacteria 0.066161 0.004243 0.154028 0.118760 0.141766 0.091341 0.036086 3.434028e-03 0.162826
199 class Actinobacteria 0.059050 0.001419 0.120385 0.101540 0.116178 0.067340 0.036086 3.434028e-03 0.137000
200 order Geodermatophilales 0.002908 0.002737
201 family Geodermatophilaceae 0.002908 0.002737
202 genus Modestobacter 0.002908
203 genus Unclassified Geodermatophilaceae 0.002737
204 order Nakamurellales 0.004568
205 family Nakamurellaceae 0.004568
206 order Kineosporiales 0.002781 0.002781 0.002794
207 family Kineosporiaceae 0.001397
208 family Unclassified Kineosporiales 0.002781 0.002781 0.001397
209 order Micrococcales 0.002224 0.008466 0.004013 0.002872 0.002720 6.868057e-04 0.002767
210 family Cellulomonadaceae 0.000959
211 genus Cellulomonas 0.000959
212 family Intrasporangiaceae 0.001107 6.868057e-04
213 genus Janibacter 6.868057e-04
214 genus Unclassified Intrasporangiaceae 0.001107
215 family Microbacteriaceae 0.004233 0.001385
216 genus Microbacterium 0.004233
217 genus Unclassified Microbacteriaceae 0.001385
218 family Unclassified Micrococcales 0.001117 0.004233 0.004013 0.001912 0.002720 0.001383
219 order Corynebacteriales 0.009432 0.016127 0.012269 0.011670 0.010843 0.024737
220 family Mycobacteriaceae 0.001984 0.002867 0.008203 0.002867 0.002888 0.001368
221 genus Mycobacterium 0.008203 0.001937
222 genus Unclassified Mycobacteriaceae 0.001984 0.002867 0.002867 0.000950 0.001368
223 family Nocardiaceae 0.005523 0.002959 0.004066 0.002959 0.002992 0.006890
224 genus Nocardia 0.001145
225 genus Rhodococcus 0.002500 0.004066 0.002992 0.001368
226 genus Unclassified Nocardiaceae 0.001879 0.002959 0.002959 0.005522
227 family Gordoniaceae 0.001381
228 family Unclassified Corynebacteriales 0.001925 0.010302 0.005844 0.004964 0.015098
229 order Micromonosporales 0.001163 0.002000
230 family Micromonosporaceae 0.001163 0.002000
231 genus Actinoplanes 0.000996
232 genus Unclassified Micromonosporaceae 0.001163 0.001004
233 order Propionibacteriales 0.009277 0.008747 0.039321 0.018272 0.005833 0.015129 0.004160
234 family Nocardioidaceae 0.009277 0.008747 0.035630 0.013704 0.004839 0.010318 0.002773
235 genus Actinopolymorpha 0.003163
236 genus Kribbella 0.009136
237 genus Nocardioides 0.004030 0.004930
238 species Nocardioides sp. JS614 0.001643
239 species Unclassified Nocardioides 0.004030 0.003286
240 genus Aeromicrobium 0.001126 0.000963
241 genus Unclassified Nocardioidaceae 0.008150 0.008747 0.031599 0.004568 0.003876 0.002226 0.002773
242 family Unclassified Propionibacteriales 0.003692 0.004568 0.000994 0.004811 0.001387
243 order Streptomycetales 0.001247 0.008848
244 family Streptomycetaceae 0.000640 0.003563
245 genus Streptomyces 0.000640
246 genus Unclassified Streptomycetaceae 0.003563
247 family Unclassified Streptomycetales 0.000607 0.005285
248 order Streptosporangiales 0.001610
249 family Streptosporangiaceae 0.000997
250 genus Nonomuraea 0.000997
251 family Unclassified Streptosporangiales 0.000613
252 order Unclassified Actinobacteria 0.031188 0.001419 0.084263 0.045937 0.078887 0.045792 0.009388 2.747223e-03 0.099805
253 class Unclassified Actinobacteria 0.007110 0.002824 0.033643 0.017220 0.025588 0.024001 0.025826
254 phylum Planctomycetes 0.008852 0.001687 0.004408 0.001310 0.002891
255 class Planctomycetia 0.007779 0.000849 0.001861 0.001445
256 order Planctomycetales 0.006695 0.000849 0.001861 0.001445
257 family Planctomycetaceae 0.000849 0.000849
258 genus Gimesia 0.000849 0.000849
259 family Isosphaeraceae 0.001068
260 genus Singulisphaera 0.001068
261 family Gemmataceae 0.004554 0.001012 0.001445
262 genus Zavarzinella 0.001137 0.001012
263 genus Unclassified Gemmataceae 0.003417 0.001445
264 family Unclassified Planctomycetales 0.001073
265 order Unclassified Planctomycetia 0.001084
266 class Unclassified Planctomycetes 0.001073 0.000838 0.002547 0.001310 0.001445
267 phylum Spirochaetes 0.002798
268 phylum Lentisphaerae 0.002954
269 phylum Nitrospirae 0.004664
270 class Nitrospira 0.003110
271 order Nitrospirales 0.001555
272 order Unclassified Nitrospira 0.001555
273 class Unclassified Nitrospirae 0.001555
274 phylum Acidobacteria 0.002179
275 genus Luteitalea 0.001079
276 class Acidobacteriia 0.001100
277 order Acidobacteriales 0.001100
278 family Acidobacteriaceae 0.001100
279 genus Terriglobus 0.001100
280 phylum Armatimonadetes 0.001423
281 phylum Verrucomicrobia 0.006664 0.003470 0.017622 0.022840 0.002989 0.040643 0.035936 0.030947
282 class Spartobacteria 0.002039 0.003470 0.001364 0.004093 0.003998
283 order Chthoniobacterales 0.001359 0.003470 0.001364 0.004093 0.003998
284 family Chthoniobacteraceae 0.001359 0.003470 0.001364 0.002728 0.003998
285 genus Chthoniobacter 0.000680 0.003470 0.001333
286 genus Unclassified Chthoniobacteraceae 0.000680 0.001364 0.002728 0.002665
287 family Unclassified Chthoniobacterales 0.001364
288 order Unclassified Spartobacteria 0.000680
289 class Verrucomicrobiae 0.001117 0.008747 0.009136 0.006841 0.002671 0.011144
290 order Verrucomicrobiales 0.009136 0.006841 0.001335 0.008396
291 family Verrucomicrobia subdivision 3 0.001335
292 genus Pedosphaera 0.001335
293 family Verrucomicrobiaceae 0.009136 0.001368 0.001335 0.004224
294 genus Verrucomicrobium 0.009136 0.001368 0.001335 0.004224
295 family Unclassified Verrucomicrobiales 0.005473 0.002837
296 order Unclassified Verrucomicrobiae 0.001117 0.008747 0.001337 0.002749
297 class Opitutae 0.001075 0.001337 0.009173 0.011771
298 order Opitutales 0.001337 0.003881 0.009076
299 family Opitutaceae 0.001337 0.002580 0.006410
300 genus Opitutus 0.002427
301 genus Unclassified Opitutaceae 0.001337 0.002580 0.003983
302 family Unclassified Opitutales 0.001301 0.002665
303 order Puniceicoccales 0.002712 0.001362
304 family Puniceicoccaceae 0.001356
305 genus Coraliomargarita 0.001356
306 family Unclassified Puniceicoccales 0.001356 0.001362
307 order Unclassified Opitutae 0.001075 0.002580 0.001333
308 class Unclassified Verrucomicrobia 0.002432 0.008875 0.013704 0.002989 0.031101 0.019999 0.004034
309 phylum Bacteroidetes 0.479461 0.001073 0.006113 0.021513 0.267178 0.072764 0.194326 0.005024 0.007229 0.413572 0.026401 0.071166 0.003465
310 order Bacteroidetes Order II. Incertae sedis 0.003465
311 class Flavobacteriia 0.350897 0.182895 0.013704 0.149620 0.263739 0.014212 0.006841
312 order Flavobacteriales 0.341048 0.182895 0.013704 0.146345 0.257833 0.010980 0.004105
313 family Flavobacteriaceae 0.339597 0.182895 0.144708 0.254881 0.009919 0.002737
314 genus Flavobacterium 0.307615 0.174764 0.112751 0.234213 0.006651
315 species Flavobacterium sp. CF136 0.006526 0.002954
316 species Flavobacterium sp. WG21 0.010996
317 species Flavobacterium johnsoniae 0.020328 0.000984
318 species Unclassified Flavobacterium 0.290094 0.154436 0.112751 0.230276 0.006651
319 genus Unclassified Flavobacteriaceae 0.031982 0.008131 0.031957 0.020668 0.003268 0.002737
320 family Unclassified Flavobacteriales 0.001451 0.013704 0.001637 0.002952 0.001060 0.001368
321 order Unclassified Flavobacteriia 0.009849 0.003275 0.005905 0.003232 0.002737
322 class Sphingobacteriia 0.006113 0.042547 0.004568 0.026676 0.010946
323 order Sphingobacteriales 0.006113 0.042547 0.004568 0.016800 0.010946
324 family Sphingobacteriaceae 0.006113 0.038294 0.004568 0.014819 0.008210
325 genus Mucilaginibacter 0.004568 0.002737
326 genus Pedobacter 0.017011 0.001968
327 species Pedobacter sp. BAL39 0.008505
328 species Unclassified Pedobacter 0.008505 0.001968
329 genus Solitalea 0.006113
330 species Solitalea canadensis 0.003057
331 species Unclassified Solitalea 0.003057
332 genus Unclassified Sphingobacteriaceae 0.021283 0.012850 0.005473
333 family Unclassified Sphingobacteriales 0.004253 0.001981 0.002737
334 order Unclassified Sphingobacteriia 0.009876
335 class Chitinophagia 0.019408 0.012820 0.004105
336 order Chitinophagales 0.016532 0.008872 0.004105
337 family Chitinophagaceae 0.013657 0.007894 0.004105
338 genus Niastella 0.002964 0.002737
339 genus Niabella 0.002157
340 species Niabella soli 0.000719
341 species Unclassified Niabella 0.001438
342 genus Segetibacter 0.000978
343 genus Chitinophaga 0.001432
344 genus Unclassified Chitinophagaceae 0.010069 0.003952 0.001368
345 family Unclassified Chitinophagales 0.002875 0.000978
346 order Unclassified Chitinophagia 0.002876 0.003947
347 class Cytophagia 0.037723 0.017393 0.025099 0.013380 0.026513 0.009590
348 order Cytophagales 0.034847 0.017393 0.025099 0.013380 0.023577 0.005481
349 family Hymenobacteraceae 0.001448 0.012041 0.008028 0.000987
350 genus Rufibacter 0.000724
351 genus Hymenobacter 0.009365 0.005352
352 species Hymenobacter sp. PAMC 26628 0.002676 0.002676
353 species Unclassified Hymenobacter 0.006689 0.002676
354 genus Unclassified Hymenobacteraceae 0.000724 0.002676 0.002676 0.000987
355 family Cytophagaceae 0.030545 0.016855 0.020632 0.002737
356 genus Spirosoma 0.000695 0.002737
357 genus Dyadobacter 0.000730 0.008428 0.002940
358 genus Unclassified Cytophagaceae 0.029121 0.008428 0.017693
359 family Unclassified Cytophagales 0.002854 0.005352 0.008244 0.005352 0.001958 0.002745
360 order Unclassified Cytophagia 0.002875 0.002935 0.004109
361 class Unclassified Bacteroidetes 0.071433 0.001073 0.004120 0.016638 0.041112 0.044706 0.005024 0.007229 0.083826 0.012189 0.039684
362 phylum Unclassified Bacteria 0.221450 0.001487 0.003344 0.003052 0.265735 0.045009 0.382504 0.040983 0.116410 0.011484 1.387779e-17 0.006059 0.483697 0.040617 0.001646 0.002972 0.013972
363 superkingdom Archaea 0.003878 0.001342
364 phylum Euryarchaeota 0.003878
365 class Halobacteria 0.003878
366 order Natrialbales 0.003878
367 phylum Unclassified Archaea 0.001342
368 superkingdom Unclassified 0.008563 0.002749 0.002895
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.04900 45 91.74 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.01924 5 94.12 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.02905 9 92.33 Cytochrome c-type protein NapC
NapD 0.05516 12 78.19 Periplasmic nitrate reductase component NapD
NapE 0.03355 5 81.18 Periplasmic nitrate reductase component NapE
NapF 0.01125 3 63.30 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NapG 0.01731 6 60.52 Ferredoxin-type protein NapG (periplasmic nitrate reductase)
NarG_NxrA 0.05401 72 96.26 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.06322 39 92.95 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.03980 13 92.19 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.04513 15 88.29 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.85402 3084 81.67 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.44027 250 77.63 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00649 4 96.20 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00993 6 97.63 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.00498 2 100.00 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.00652 4 94.48 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.62072 423 75.06 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.80814 2607 87.82 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 2.12408 497 83.34 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.10040 57 72.31 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirM 0.00489 1 88.00 Cytochrome c551 NirM
NirS 0.00154 1 96.00 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirU 0.46349 298 79.16 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.01497 11 92.93 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00501 3 69.40 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
UreA 2.63995 592 87.80 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.75898 632 83.95 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.68110 2452 90.31 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.01931 6 63.85 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.01931 16 83.97 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00501 3 69.40
Denitrification 0.16042 92 76.68
Nitrate assimilatory reduction 3.29429 3334 81.37
Nitrate dissimilatory reduction 0.41673 224 91.10
Nitrite assimilation 6.01642 3825 85.15
Nitrogen fixation 0.02791 16 96.78
Urease 9.08004 3676 88.81
NapD NapC NirM NarJ NasA NapG NifH_AnfH_VnfH NapA NarH_NxrB NifK_AnfK_VnfK NirS NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapE NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.055160 0.029054 0.004886 4.512984e-02 2.854016 0.017312 0.004979 0.049005 0.063215 0.006519 0.001535 0.009926 2.758984 0.011246 2.124078 2.639955 0.100398 0.019313 0.014975 2.808143 0.440271 0.054013 1.931209e-02 3.681099 0.620716 0.033552 0.019241 0.005006 0.039801 0.006488 0.463488
2 norank Unknown 0.000958 0.026045 0.003005 0.021026 0.001545
3 superkingdom Bacteria 0.055160 0.029054 0.004886 4.512984e-02 2.851822 0.017312 0.004979 0.049005 0.063215 0.006519 0.001535 0.009926 2.732939 0.011246 2.124078 2.636950 0.100398 0.019313 0.014975 2.808143 0.440271 0.054013 1.931209e-02 3.658571 0.613156 0.033552 0.019241 0.005006 0.039801 0.006488 0.463488
4 phylum Cyanobacteria 0.022862 0.001073 0.004631
5 order Oscillatoriales 0.001202 0.001385
6 family Cyanothecaceae 0.001202
7 family Oscillatoriaceae 0.001385
8 order Synechococcales 0.001190
9 class Unclassified Cyanobacteria 0.020470 0.001073 0.003246
10 phylum Proteobacteria 0.055160 0.029054 0.004886 4.201455e-02 1.667013 0.005167 0.043507 0.052430 0.004888 0.001535 0.008342 1.278966 0.011246 1.307767 1.124651 0.044146 0.007077 0.012236 1.689602 0.363440 0.052507 1.456261e-02 1.537194 0.190663 0.033552 0.019241 0.039801 0.006488 0.204744
11 class Gammaproteobacteria 0.014264 0.004886 2.964310e-02 0.133227 0.006498 0.039315 0.001535 0.161968 0.106279 0.098152 0.002231 0.004064 0.167060 0.022249 0.032910 4.113767e-03 0.128160 0.018484
12 order Chromatiales 0.004361
13 family Chromatiaceae 0.004361
14 order Xanthomonadales 0.001974
15 family Xanthomonadaceae 0.001974
16 order Methylococcales 0.002709 1.169110e-03
17 family Methylococcaceae 0.002032
18 genus Methylomicrobium 0.000677
19 species Methylomicrobium album 0.000677
20 genus Unclassified Methylococcaceae 0.001355
21 family Unclassified Methylococcales 0.000677 1.169110e-03
22 order Oceanospirillales 0.000999
23 order Cellvibrionales 0.001347 0.001068
24 family Cellvibrionaceae 0.001347 0.001068
25 genus Cellvibrio 0.001347 0.001068
26 order Nevskiales 0.004003 0.002116
27 family Sinobacteraceae 0.004003 0.002116
28 genus Hydrocarboniphaga 0.002001 0.001058
29 species Hydrocarboniphaga effusa 0.002001
30 species Unclassified Hydrocarboniphaga 0.001058
31 genus Unclassified Sinobacteraceae 0.002001 0.001058
32 order Pseudomonadales 0.014264 0.004886 0.063245 0.004327 0.001535 0.139708 0.049979 0.085777 0.002231 0.004064 0.092483 2.944658e-03 0.113233
33 family Pseudomonadaceae 0.014264 0.004886 0.055393 0.002164 0.001535 0.139708 0.040906 0.085777 0.002231 0.004064 0.084009 1.759150e-03 0.108689
34 genus Pseudomonas 0.009509 0.004886 0.026761 0.001535 0.105028 0.023078 0.065849 0.002231 0.004064 0.060586 1.759150e-03 0.071123
35 genus Unclassified Pseudomonadaceae 0.004755 0.028633 0.002164 0.034680 0.017829 0.019929 0.023423 0.037566
36 family Unclassified Pseudomonadales 0.007852 0.002164 0.009073 0.008474 1.185507e-03 0.004544
37 order Enterobacterales 2.076959e-02 0.020918 0.001089 0.024574 0.039382 0.035214 0.012945 0.027672 0.001394 0.015406
38 family Erwiniaceae 5.904187e-03 0.001045 0.001089 0.016448 0.008487 0.002066 0.003738 0.003087
39 genus Pantoea 0.001089 0.006186 0.002460 0.001392 0.000748
40 genus Erwinia 5.904187e-03 0.009588 0.005352 0.002243 0.003087
41 species Erwinia billingiae 2.952093e-03 0.004794 0.003211 0.000748 0.003087
42 species Unclassified Erwinia 2.952093e-03 0.004794 0.002141 0.001495
43 genus Unclassified Erwiniaceae 0.001045 0.000675 0.000675 0.000675 0.000748
44 family Pectobacteriaceae 0.005448 0.000748
45 genus Pectobacterium 0.001354
46 genus Brenneria 0.000727
47 genus Unclassified Pectobacteriaceae 0.003367 0.000748
48 family Yersiniaceae 8.856280e-03 0.003073 0.001650 0.016799 0.009941 0.004743 0.004483 0.009232
49 genus Rahnella 8.856280e-03 0.001650 0.009238 0.002128 0.004483 0.009232
50 genus Unclassified Yersiniaceae 0.003073 0.007561 0.007812 0.004743
51 family Enterobacteriaceae 6.009122e-03 0.002856 0.000695 0.000695 0.000695 0.001394
52 genus Gibbsiella 0.000674
53 genus Unclassified Enterobacteriaceae 6.009122e-03 0.002182 0.000695 0.000695 0.000695 0.001394
54 family Unclassified Enterobacterales 0.008497 0.022923 0.005440 0.016091 0.005440 0.018703 0.003087
55 order Unclassified Gammaproteobacteria 8.873514e-03 0.038032 0.001082 0.014741 0.022259 0.016918 0.008014 0.036179 0.009304 0.005238 0.013532 0.003077
56 class Alphaproteobacteria 0.014247 0.009524 0.637868 0.006491 0.003258 0.005041 0.486173 0.011246 0.614462 0.466368 0.007294 0.009507 0.645987 0.220334 1.151850e-03 0.596228 0.145740 0.012420 0.003907 0.002927 0.196836
57 order Rhodospirillales 0.004073 0.011208 0.011246 0.002014 0.011899 0.006299
58 family Rhodospirillaceae 0.001032 0.011246
59 family Acetobacteraceae 0.009916 0.009073 0.006299
60 species Acetobacteraceae bacterium AT-5844 0.003016
61 genus Roseomonas 0.004958
62 genus Unclassified Acetobacteraceae 0.004958 0.006057 0.006299
63 family Unclassified Rhodospirillales 0.003041 0.001293 0.002014 0.002826
64 order Rhodobacterales 0.004958 0.004727 0.014946 0.002204 0.009750 0.010528
65 family Rhodobacteraceae 0.004958 0.004727 0.014946 0.005890 0.004496
66 genus Paracoccus 0.004727
67 genus Unclassified Rhodobacteraceae 0.004958 0.014946 0.005890 0.004496
68 family Unclassified Rhodobacterales 0.002204 0.003860 0.006032
69 order Sphingomonadales 0.295167 0.088213 0.484450 0.019929 0.364994 0.069364
70 family Sphingomonadaceae 0.270677 0.088213 0.442366 0.019929 0.289328 0.063334
71 genus Sphingomonas 0.028406 0.126553 0.039869
72 species Sphingomonas taxi 0.009453 0.001085
73 species Sphingomonas panacis 0.028099 0.007525
74 species Sphingomonas sp. ATCC 31555 0.001081
75 species Unclassified Sphingomonas 0.027326 0.089001 0.031259
76 genus Blastomonas 0.003135
77 genus Rhizorhabdus 0.001039
78 genus Sphingobium 0.028094 0.121546 0.010745
79 species Sphingobium sp. RAC03 0.009323
80 species Sphingobium sp. SYK-6 0.004705
81 species Unclassified Sphingobium 0.028094 0.107518 0.010745
82 genus Novosphingobium 0.005880 0.034536 0.050496 0.014946 0.018266 0.027145
83 species Novosphingobium resinovorum 0.001038
84 species Novosphingobium sp. Rr 2-17 0.004524
85 species Unclassified Novosphingobium 0.004843 0.034536 0.050496 0.014946 0.018266 0.022621
86 genus Unclassified Sphingomonadaceae 0.204122 0.053677 0.143771 0.004982 0.220448 0.036189
87 family Unclassified Sphingomonadales 0.024490 0.042084 0.075666 0.006030
88 order Caulobacterales 0.032717 0.045512 0.045042
89 family Caulobacteraceae 0.023559 0.036252 0.037365
90 genus Phenylobacterium 0.004216 0.001098
91 genus Caulobacter 0.006076 0.009280 0.019803
92 species Caulobacter sp. K31 0.002201
93 species Unclassified Caulobacter 0.006076 0.009280 0.017601
94 genus Unclassified Caulobacteraceae 0.017483 0.022756 0.016464
95 family Unclassified Caulobacterales 0.009158 0.009259 0.007677
96 order Rhizobiales 0.009498 0.009524 0.167730 0.002157 0.003258 0.246514 0.042414 0.216642 0.007294 0.008141 0.028676 0.182516 0.245258 0.141380 0.006210 0.003907 0.002927 0.188964
97 family Methylobacteriaceae 0.012153 0.019526 0.019526 0.013664 0.016475 0.020300 0.012700
98 genus Methylobacterium 0.005041 0.016382 0.016382 0.011678 0.010496 0.014515 0.011109
99 species Methylobacterium sp. 77 0.001452
100 species Methylobacterium sp. 88A 0.003001
101 species Unclassified Methylobacterium 0.005041 0.016382 0.016382 0.011678 0.007496 0.013063 0.011109
102 genus Unclassified Methylobacteriaceae 0.007112 0.003144 0.003144 0.001987 0.005979 0.005785 0.001591
103 family Aurantimonadaceae 0.000742 0.004982 0.003012
104 family Methylocystaceae 0.001689 0.001948 0.001566
105 genus Methylocystis 0.000669
106 genus Methylopila 0.001020 0.001566
107 genus Unclassified Methylocystaceae 0.001948
108 family Xanthobacteraceae 0.001008 0.003222
109 genus Starkeya 0.001008 0.001611
110 genus Unclassified Xanthobacteraceae 0.001611
111 family Bradyrhizobiaceae 0.009498 0.006310 0.064743 0.002157 0.001629 0.035974 0.051138 0.001410 0.109670 0.042086 0.090412 0.006210 0.002927 0.115973
112 genus Rhodopseudomonas 0.004886 0.003950
113 genus Bradyrhizobium 0.009498 0.006069 0.001629 0.003022 0.003022 0.040010 0.035993 0.006210 0.022235
114 species Bradyrhizobium sp. S23321 0.001588
115 species Unclassified Bradyrhizobium 0.009498 0.006069 0.001629 0.003022 0.003022 0.040010 0.035993 0.006210 0.020646
116 genus Bosea 0.008071 0.003276 0.003276 0.007873 0.004464 0.008678 0.002927 0.004826
117 species Bosea sp. PAMC 26642 0.001488 0.001446
118 species Bosea sp. RAC05 0.002976 0.002927
119 species Unclassified Bosea 0.008071 0.003276 0.003276 0.007873 0.007233 0.004826
120 genus Unclassified Bradyrhizobiaceae 0.006310 0.050603 0.002157 0.024789 0.044839 0.001410 0.057837 0.037621 0.045741 0.088913
121 family Hyphomicrobiaceae 0.001020 0.009916 0.001104 0.002002 0.001446
122 genus Pelagibacterium 0.001104
123 genus Unclassified Hyphomicrobiaceae 0.001020 0.009916 0.002002 0.001446
124 family Beijerinckiaceae 0.002500 0.001469
125 family Phyllobacteriaceae 0.004800 0.014873 0.009542 0.004982 0.002946
126 genus Hoeflea 0.004958
127 species Hoeflea phototrophica 0.004958
128 genus Mesorhizobium 0.004800 0.009916 0.009542 0.004982 0.001473
129 species Mesorhizobium sp. WSM1497 0.000960
130 species Unclassified Mesorhizobium 0.003840 0.009916 0.009542 0.004982 0.001473
131 genus Unclassified Phyllobacteriaceae 0.001473
132 family Rhizobiaceae 0.037642 0.089240 0.032871 0.004982 0.016547 0.031647
133 genus Ensifer 0.001515
134 genus Neorhizobium 0.003893
135 species Neorhizobium galegae 0.001011
136 species Unclassified Neorhizobium 0.002883
137 genus Kaistia 0.003007
138 species Kaistia granuli 0.001513
139 species Unclassified Kaistia 0.001495
140 genus Agrobacterium 0.004727 0.001104
141 genus Rhizobium 0.007180 0.044620 0.004982 0.006032
142 species Rhizobium sp. 2MFCol3.1 0.001508
143 species Unclassified Rhizobium 0.007180 0.044620 0.004982 0.004524
144 genus Unclassified Rhizobiaceae 0.026568 0.044620 0.028144 0.015443 0.021093
145 family Unclassified Rhizobiales 0.003214 0.041434 0.001629 0.076986 0.131032 0.007294 0.006732 0.011024 0.055231 0.149092 0.027753 0.003907 0.055503
146 order Unclassified Alphaproteobacteria 0.004749 0.138181 0.004334 0.005041 0.135279 0.037360 0.214851 0.001366 0.205072 0.026054 1.151850e-03 0.259179 0.004360 0.006210 0.001574
147 class Betaproteobacteria 0.026650 0.009612 1.237144e-02 0.513031 0.002584 0.017406 0.006525 0.310345 0.460770 0.201822 0.010776 0.554397 0.080636 0.013581 1.150544e-03 0.440972 0.021132 0.015334 0.015313
148 order Neisseriales 0.002011 0.004727
149 family Neisseriaceae 0.002011 0.004727
150 genus Vitreoscilla 0.001006 0.004727
151 genus Unclassified Neisseriaceae 0.001006
152 order Rhodocyclales 0.004910 0.002158
153 family Zoogloeaceae 0.001072
154 family Rhodocyclaceae 0.001086
155 family Unclassified Rhodocyclales 0.004910
156 order Nitrosomonadales 0.022110 0.019735 0.029226 0.004982 0.032102 0.013613
157 family Methylophilaceae 0.018087 0.019735 0.029226 0.004982 0.028779 0.010588
158 genus Methylotenera 0.004982 0.002201 0.001513
159 genus Methylovorus 0.004886 0.004538
160 genus Unclassified Methylophilaceae 0.018087 0.019735 0.024339 0.026577 0.004538
161 family Unclassified Nitrosomonadales 0.004023 0.003324 0.003025
162 order Burkholderiales 0.017881 0.009612 6.091417e-03 0.367333 0.017406 0.003266 0.241270 0.368282 0.112475 0.010776 0.370171 0.072717 0.006789 1.150544e-03 0.335993 0.007077 0.015334 0.009177
163 family Burkholderiaceae 0.004727 0.015666 0.002180 0.001634 0.004457 0.001971 0.001504 0.007527 0.003068
164 genus Paraburkholderia 0.001090
165 genus Burkholderia 0.000671
166 genus Ralstonia 0.000995
167 genus Unclassified Burkholderiaceae 0.004727 0.014001 0.001090 0.001634 0.004457 0.001971 0.001504 0.007527 0.003068
168 genus Rhizobacter 0.000990 0.004511
169 genus Rubrivivax 0.001490
170 genus Methylibium 0.004399 0.001495
171 species Methylibium petroleiphilum 0.004399
172 species Unclassified Methylibium 0.001495
173 genus Paucibacter 0.007077
174 family Alcaligenaceae 0.000672
175 family Oxalobacteraceae 3.086856e-03 0.052217 0.001632 0.023901 0.050916 0.004982 0.009075 0.028918 0.039263 0.002269 0.043918
176 genus Massilia 0.001873
177 species Massilia sp. B2 0.001873
178 genus Collimonas 0.000996
179 genus Janthinobacterium 3.086856e-03 0.014098 0.004982 0.001067 0.003965
180 species Janthinobacterium sp. HH01 0.001004 0.001067
181 species Unclassified Janthinobacterium 3.086856e-03 0.013094 0.004982 0.003965
182 genus Herminiimonas 0.004015 0.007375 0.001074
183 species Herminiimonas arsenicoxydans 0.003011 0.002458
184 species Unclassified Herminiimonas 0.001004 0.004917 0.001074
185 genus Duganella 0.003935
186 genus Herbaspirillum 0.001999 0.004817 0.003168 0.001908 0.001515
187 genus Unclassified Oxalobacteraceae 0.031109 0.001632 0.019085 0.050916 0.001700 0.023610 0.027582 0.002269 0.042404
188 family Comamonadaceae 0.004385 0.009612 0.164983 0.008701 0.113656 0.140384 0.049656 0.134437 1.150544e-03 0.139262 0.007667
189 genus Acidovorax 0.004385 0.009612 0.004823 0.005438 0.004958 0.004399 0.001069 0.001484 0.007667
190 species Acidovorax sp. CF316 0.004958
191 species Acidovorax sp. MR-S7 0.001088
192 species Unclassified Acidovorax 0.004385 0.009612 0.004823 0.004350 0.004399 0.001069 0.001484 0.007667
193 genus Ramlibacter 0.008798 0.004817
194 genus Caldimonas 0.000997
195 genus Rhodoferax 0.001963 0.004958 0.004380 0.002148 0.006005
196 species Rhodoferax koreense 0.006005
197 species Unclassified Rhodoferax 0.001963 0.004958 0.004380 0.002148
198 genus Comamonas 0.001506
199 genus Variovorax 0.004891 0.034704 0.049583 0.042417 0.006005
200 species Variovorax sp. PAMC 28711 0.004683 0.002148
201 species Variovorax paradoxus 0.009916 0.001073
202 species Unclassified Variovorax 0.004891 0.024789 0.044900 0.039197 0.006005
203 genus Hydrogenophaga 0.000965
204 genus Polaromonas 0.004673 0.008328 0.001501
205 species Polaromonas sp. CF318 0.000962
206 species Unclassified Polaromonas 0.003712 0.008328 0.001501
207 genus Limnohabitans 0.000950
208 genus Unclassified Comamonadaceae 0.145722 0.003263 0.069036 0.064897 0.044839 0.088802 1.150544e-03 0.122760
209 family Unclassified Burkholderiales 0.008769 3.004561e-03 0.132805 0.006525 0.103713 0.168126 0.057837 0.001700 0.206816 0.031483 0.003016 0.137790 0.007667 0.006109
210 order Unclassified Betaproteobacteria 0.008769 6.280026e-03 0.121578 0.002584 0.003258 0.049340 0.053626 0.084365 0.149965 0.007919 0.006792 0.091366 0.014056 0.006136
211 class Deltaproteobacteria 0.003743 0.039747 0.039747 0.007022 0.018052
212 order Myxococcales 0.003743 0.025523 0.025523 0.005257 0.010532
213 family Sandaracinaceae 0.002487 0.001726
214 genus Sandaracinus 0.001244 0.001726
215 genus Unclassified Sandaracinaceae 0.001244
216 family Labilitrichaceae 0.002869 0.002869 0.001506
217 family Kofleriaceae 0.001508
218 genus Haliangium 0.001508
219 family Polyangiaceae 0.001765
220 family Unclassified Myxococcales 0.001256 0.022655 0.022655 0.001765 0.007518
221 order Unclassified Deltaproteobacteria 0.014224 0.014224 0.001765 0.007520
222 class Unclassified Proteobacteria 0.009918 6.938894e-18 0.379143 0.002584 0.013112 0.006591 0.001629 0.003301 0.280733 0.126256 0.318561 0.023845 0.003013 0.002729 0.322158 0.033198 0.006015 8.146450e-03 0.353781 0.044923 0.003077 0.006488 0.007907
223 phylum Firmicutes 0.001301 0.006717 0.004496 0.009731 0.015600 0.006229 0.005997 0.022147
224 class Clostridia 0.003408 0.004982 0.001499
225 order Clostridiales 0.004982 0.001499
226 family Ruminococcaceae 0.004982
227 genus Ruminiclostridium 0.004982
228 family Unclassified Clostridiales 0.001499
229 order Unclassified Clostridia 0.003408
230 class Bacilli 0.004496 0.004749 0.001109 0.003644 0.004497
231 order Bacillales 0.004496 0.001109 0.003005
232 family Paenibacillaceae 0.004496 0.001109 0.001504
233 genus Thermobacillus 0.004496
234 genus Unclassified Paenibacillaceae 0.001109 0.001504
235 family Unclassified Bacillales 0.001501
236 order Unclassified Bacilli 0.004749 0.003644 0.001493
237 class Unclassified Firmicutes 0.001301 0.003308 0.014491 0.002586 0.022147
238 phylum Deinococcus-Thermus 0.001048 0.002963
239 class Deinococci 0.001482
240 order Thermales 0.001482
241 family Thermaceae 0.001482
242 class Unclassified Deinococcus-Thermus 0.001048 0.001482
243 phylum Chloroflexi 0.001238 0.006179
244 class Chloroflexia 0.001238
245 order Herpetosiphonales 0.001238
246 family Herpetosiphonaceae 0.001238
247 genus Herpetosiphon 0.001238
248 class Unclassified Chloroflexi 0.006179
249 phylum Actinobacteria 3.115298e-03 0.312429 0.010785 0.507793 0.460418 0.437098 0.001050 0.495919 0.055948 0.001506 0.774992
250 class Actinobacteria 3.115298e-03 0.278528 0.010785 0.437021 0.402329 0.336659 0.001050 0.422858 0.053823 0.001506 0.629301
251 order Geodermatophilales 0.002123
252 family Geodermatophilaceae 0.002123
253 genus Modestobacter 0.002123
254 order Nakamurellales 3.115298e-03 0.001081 0.003025
255 family Nakamurellaceae 0.001081 0.003025
256 genus Nakamurella 0.001513
257 genus Unclassified Nakamurellaceae 0.001081 0.001513
258 family Unclassified Nakamurellales 3.115298e-03
259 order Kineosporiales 0.003041 0.003041 0.004592
260 family Kineosporiaceae 0.003041 0.003041 0.004592
261 genus Kineococcus 0.001531
262 species Kineococcus radiotolerans 0.001531
263 genus Unclassified Kineosporiaceae 0.003041 0.003041 0.003062
264 order Micrococcales 0.009831 0.013857 0.013359 0.059737 0.003050 0.007509 0.000753 0.010606
265 family Micrococcaceae 0.004982
266 family Dermacoccaceae 0.001251 0.004982
267 family Cellulomonadaceae 0.004982
268 family Promicromonosporaceae 0.002402 0.004982 0.001495
269 family Microbacteriaceae 0.013857 0.004496 0.019880 0.002007 0.003048 0.003034
270 genus Agromyces 0.001043 0.001581
271 genus Microbacterium 0.004619 0.014898
272 genus Frondihabitans 0.004982
273 genus Unclassified Microbacteriaceae 0.009238 0.004496 0.000965 0.001467 0.003034
274 family Unclassified Micrococcales 0.006178 0.008863 0.019929 0.001043 0.002966 0.000753 0.007572
275 order Corynebacteriales 0.103701 0.080427 0.215793 0.050285 0.227102 0.001694 0.136636
276 family Mycobacteriaceae 0.043003 0.003154 0.116496 0.003154 0.096553 0.030132
277 genus Mycobacterium 0.021701 0.065317 0.049586 0.007500
278 genus Unclassified Mycobacteriaceae 0.021302 0.003154 0.051180 0.003154 0.046967 0.022632
279 family Nocardiaceae 0.034430 0.017709 0.062567 0.017920 0.053334 0.001694 0.027025
280 genus Nocardia 0.004950 0.001083 0.001499
281 species Nocardia sp. 348MFTsu5.1 0.002475 0.001083
282 species Unclassified Nocardia 0.002475 0.001499
283 genus Rhodococcus 0.022624 0.012938 0.062567 0.012938 0.034846 0.010494
284 genus Unclassified Nocardiaceae 0.006855 0.004771 0.004982 0.017405 0.001694 0.015032
285 family Unclassified Corynebacteriales 0.026268 0.059564 0.036730 0.029210 0.077215 0.079479
286 order Micromonosporales 0.001275 0.004598 0.019312 0.002127
287 family Micromonosporaceae 0.001275 0.004598 0.019312 0.001034
288 genus Actinoplanes 0.014496
289 genus Unclassified Micromonosporaceae 0.001275 0.004598 0.004817 0.001034
290 family Unclassified Micromonosporales 0.001092
291 order Propionibacteriales 0.051754 0.001661 0.009542 0.087194 0.004982 0.001050 0.020206 0.017440 0.006077
292 family Propionibacteriaceae 0.002164 0.001661
293 family Nocardioidaceae 0.042056 0.009542 0.065409 0.004982 0.012790 0.007134 0.003039
294 genus Actinopolymorpha 0.002481
295 genus Nocardioides 0.002589 0.013273 0.004309 0.005399
296 genus Aeromicrobium 0.007407 0.001056
297 genus Pimelobacter 0.001301
298 genus Unclassified Nocardioidaceae 0.028278 0.009542 0.052136 0.004982 0.007425 0.001735 0.003039
299 family Unclassified Propionibacteriales 0.007534 0.021785 0.001050 0.007417 0.010306 0.003039
300 order Pseudonocardiales 0.002643 0.004910
301 family Pseudonocardiaceae 0.002643
302 family Unclassified Pseudonocardiales 0.004910
303 order Streptomycetales 0.003328 0.017744 0.000985 0.017744 0.000985 0.003950 0.013549
304 family Streptomycetaceae 0.002626 0.017744 0.000985 0.017744 0.000985 0.003950 0.007557
305 genus Streptomyces 0.001261 0.006136 0.006136
306 genus Unclassified Streptomycetaceae 0.001366 0.011608 0.000985 0.011608 0.000985 0.003950 0.007557
307 family Unclassified Streptomycetales 0.000702 0.005993
308 order Streptosporangiales 0.002893 0.002893
309 family Streptosporangiaceae 0.002893 0.002893
310 genus Streptosporangium 0.002893 0.002893
311 species Streptosporangium roseum 0.002893 0.002893
312 order Frankiales 0.002016 0.009073 0.005214
313 family Frankiaceae 0.002016 0.004178
314 family Unclassified Frankiales 0.009073 0.001036
315 order Unclassified Actinobacteria 0.100777 0.009123 0.300008 0.056613 0.197977 0.164172 0.023230 0.000753 0.454815
316 class Acidimicrobiia 0.001501
317 order Acidimicrobiales 0.001501
318 family Acidimicrobiaceae 0.001501
319 class Unclassified Actinobacteria 0.033901 0.070773 0.058089 0.100439 0.073062 0.002126 0.144190
320 phylum Planctomycetes 0.030132 0.000907 0.005936 0.001762 0.004497 0.016876 0.015647
321 class Planctomycetia 0.022838 0.000907 0.004999 0.001762 0.004497 0.005563 0.012723
322 order Planctomycetales 0.016911 0.000907 0.003125 0.001762 0.004127 0.012723
323 family Planctomycetaceae 0.005941 0.001591
324 family Gemmataceae 0.001251 0.002218 0.001762 0.004750
325 genus Gemmata 0.001762
326 genus Zavarzinella 0.001109
327 genus Unclassified Gemmataceae 0.001251 0.001109 0.004750
328 family Unclassified Planctomycetales 0.009718 0.000907 0.000907 0.004127 0.006382
329 order Unclassified Planctomycetia 0.005927 0.001874 0.004497 0.001435
330 class Phycisphaerae 0.002490 0.001462
331 order Phycisphaerales 0.002490 0.001462
332 family Phycisphaeraceae 0.001245
333 family Unclassified Phycisphaerales 0.001245 0.001462
334 class Unclassified Planctomycetes 0.004804 0.000937 0.011313 0.001462
335 phylum Spirochaetes 0.012236
336 phylum Lentisphaerae 0.003239
337 phylum Acidobacteria 0.007147 0.007849 0.011570 0.011651
338 class Acidobacteriia 0.007147 0.005783 0.008743
339 order Acidobacteriales 0.007147 0.005783 0.008743
340 family Acidobacteriaceae 0.007147 0.005783 0.007289
341 genus Terriglobus 0.001205 0.002887 0.001473
342 species Terriglobus roseus 0.001205 0.002887
343 species Unclassified Terriglobus 0.001473
344 genus Granulicella 0.004736 0.001448 0.004362
345 genus Unclassified Acidobacteriaceae 0.001205 0.001448 0.001454
346 family Unclassified Acidobacteriales 0.001454
347 class Solibacteres 0.002243
348 order Solibacterales 0.002243
349 family Solibacteraceae 0.002243
350 class Unclassified Acidobacteria 0.005606 0.005787 0.002908
351 phylum Armatimonadetes 0.002462 0.001559
352 class Chthonomonadetes 0.001559
353 order Chthonomonadales 0.001559
354 family Chthonomonadaceae 0.001559
355 class Fimbriimonadia 0.002462
356 order Fimbriimonadales 0.002462
357 family Fimbriimonadaceae 0.002462
358 genus Fimbriimonas 0.001184
359 genus Unclassified Fimbriimonadaceae 0.001278
360 phylum Verrucomicrobia 0.056651 0.109215 0.044839 0.006594 0.201607 0.205783 0.001547 0.155008
361 class Spartobacteria 0.016401 0.014729 0.001637 0.014947 0.025410 0.030666
362 order Chthoniobacterales 0.009691 0.009820 0.013453 0.025410 0.030666
363 family Chthoniobacteraceae 0.009691 0.009820 0.011958 0.023916 0.023365
364 genus Chthoniobacter 0.008200 0.004484 0.014947 0.004381
365 species Chthoniobacter flavus 0.002989
366 species Unclassified Chthoniobacter 0.008200 0.001495 0.014947 0.004381
367 genus Unclassified Chthoniobacteraceae 0.001491 0.009820 0.007474 0.008968 0.018984
368 family Unclassified Chthoniobacterales 0.001495 0.001495 0.007301
369 order Unclassified Spartobacteria 0.006709 0.004910 0.001637 0.001495
370 species Verrucomicrobia bacterium IMCC26134 0.001467
371 class Verrucomicrobiae 0.017040 0.038170 0.004982 0.043475 0.041000 0.001547 0.038493
372 order Verrucomicrobiales 0.014607 0.033398 0.004982 0.035980 0.038074 0.038493
373 family Verrucomicrobia subdivision 3 0.003590 0.004394 0.001462
374 genus Pedosphaera 0.003590
375 genus Unclassified Verrucomicrobia subdivision 3 0.004394 0.001462
376 family Rubritaleaceae 0.004432
377 genus Rubritalea 0.001477
378 genus Unclassified Rubritaleaceae 0.002955
379 family Verrucomicrobiaceae 0.008569 0.028627 0.029983 0.026323 0.018510
380 genus Verrucomicrobium 0.004897 0.019085 0.010494 0.017549 0.004627
381 species Verrucomicrobium spinosum 0.001224
382 species Unclassified Verrucomicrobium 0.003672 0.019085 0.010494 0.017549 0.004627
383 genus Unclassified Verrucomicrobiaceae 0.003672 0.009542 0.019489 0.008774 0.013882
384 family Unclassified Verrucomicrobiales 0.002448 0.004771 0.004982 0.005997 0.002925 0.018521
385 order Unclassified Verrucomicrobiae 0.002432 0.004771 0.007496 0.002927 0.001547
386 class Opitutae 0.008305 0.001683 0.017589 0.031273 0.047446
387 order Opitutales 0.002357 0.017589 0.029787 0.043032
388 family Opitutaceae 0.002357 0.014658 0.029787 0.028870
389 genus Opitutus 0.001467 0.004276 0.001330
390 genus Lacunisphaera 0.001465 0.001417 0.002921
391 genus Unclassified Opitutaceae 0.002357 0.011727 0.024093 0.024620
392 family Unclassified Opitutales 0.002931 0.014162
393 order Puniceicoccales 0.003590 0.001486 0.001493
394 family Puniceicoccaceae 0.003590 0.001486
395 family Unclassified Puniceicoccales 0.001493
396 order Unclassified Opitutae 0.002357 0.001683 0.002921
397 class Unclassified Verrucomicrobia 0.014907 0.056316 0.039857 0.003274 0.124129 0.108100 0.038403
398 phylum Bacteroidetes 0.322077 0.001154 0.001583 0.081656 0.286789 0.127968 0.015613 0.345324 4.749479e-03 0.116991 0.001435 0.015045
399 order Bacteroidetes Order II. Incertae sedis 0.015045
400 family Rhodothermaceae 0.009861
401 family Unclassified Bacteroidetes Order II. Incertae sedis 0.005184
402 class Flavobacteriia 0.078569 0.001154 0.017985 0.057665 0.009964 0.013898 0.080915 1.196697e-03 0.002998
403 order Flavobacteriales 0.074977 0.001154 0.017985 0.057665 0.009964 0.013898 0.078756 1.196697e-03 0.002998
404 family Flavobacteriaceae 0.074181 0.004496 0.057665 0.009964 0.012163 0.076597 1.196697e-03 0.001499
405 genus Flavobacterium 0.067384 0.057665 0.004982 0.006999 0.069045 1.196697e-03
406 species Flavobacterium sp. CF136 0.000795
407 species Flavobacterium sp. WG21 0.002410
408 species Flavobacterium johnsoniae 0.008875
409 species Unclassified Flavobacterium 0.064178 0.048790 0.004982 0.006999 0.069045 1.196697e-03
410 genus Unclassified Flavobacteriaceae 0.006798 0.004496 0.004982 0.005165 0.007552 0.001499
411 family Unclassified Flavobacteriales 0.000795 0.001154 0.013489 0.001735 0.002159 0.001499
412 order Unclassified Flavobacteriia 0.003593 0.002159
413 class Sphingobacteriia 0.011122 0.001583 0.004457 0.069194 0.004982 0.018448 0.013492
414 order Sphingobacteriales 0.010328 0.001583 0.069194 0.004982 0.016263 0.011993
415 family Sphingobacteriaceae 0.010328 0.001583 0.064554 0.004982 0.011940 0.010494
416 genus Arcticibacter 0.001583
417 species Arcticibacter svalbardensis 0.001583
418 genus Mucilaginibacter 0.002383 0.008722 0.006518
419 genus Pedobacter 0.041848 0.003250
420 species Pedobacter sp. BAL39 0.004640
421 species Unclassified Pedobacter 0.037207 0.003250
422 genus Unclassified Sphingobacteriaceae 0.007945 0.013985 0.004982 0.002172 0.010494
423 family Unclassified Sphingobacteriales 0.004640 0.004324 0.001499
424 order Unclassified Sphingobacteriia 0.000794 0.004457 0.002185 0.001499
425 class Chitinophagia 0.026824 0.004476 0.018036 0.027029 0.007496
426 order Chitinophagales 0.022879 0.018036 0.020565 0.005997
427 family Chitinophagaceae 0.018143 0.018036 0.014057 0.002998
428 genus Niastella 0.004619 0.003249
429 genus Niabella 0.003946
430 species Niabella ginsenosidivorans 0.000790
431 species Unclassified Niabella 0.003155
432 genus Segetibacter 0.000790 0.001073
433 genus Filimonas 0.008798
434 genus Chitinophaga 0.001076
435 genus Unclassified Chitinophagaceae 0.013408 0.004619 0.008659 0.002998
436 family Unclassified Chitinophagales 0.004736 0.006508 0.002998
437 order Unclassified Chitinophagia 0.003944 0.004476 0.006463 0.001499
438 class Cytophagia 0.129292 0.020416 0.123800 0.020416 0.117260 0.031540
439 order Cytophagales 0.119970 0.017572 0.119202 0.017572 0.108645 0.030036
440 family Hymenobacteraceae 0.011802 0.011802 0.001504
441 genus Hymenobacter 0.005853 0.005853
442 genus Unclassified Hymenobacteraceae 0.005949 0.005949 0.001504
443 family Cytophagaceae 0.113772 0.002885 0.119202 0.002885 0.091429 0.019529
444 genus Spirosoma 0.011512 0.009196 0.007542 0.007496
445 species Spirosoma linguale 0.000762 0.001078
446 species Spirosoma spitsbergense 0.002998
447 species Unclassified Spirosoma 0.010750 0.009196 0.006463 0.004497
448 genus Dyadobacter 0.005464 0.036785 0.029021
449 species Dyadobacter beijingensis 0.002145
450 species Unclassified Dyadobacter 0.005464 0.036785 0.026876
451 genus Fibrisoma 0.000780
452 genus Fibrella 0.004536 0.001076
453 genus Cytophaga 0.004756 0.018227 0.004313 0.009035
454 species Cytophaga aurantiaca 0.000793
455 species Unclassified Cytophaga 0.003963 0.018227 0.004313 0.009035
456 genus Unclassified Cytophagaceae 0.091260 0.002885 0.050457 0.002885 0.049476 0.002998
457 family Unclassified Cytophagales 0.006198 0.002885 0.002885 0.017216 0.009004
458 order Unclassified Cytophagia 0.009323 0.002844 0.004598 0.002844 0.008615 0.001504
459 class Unclassified Bacteroidetes 0.076270 0.034321 0.018094 0.092605 0.001715 0.101672 3.552783e-03 0.061465 0.001435
460 phylum Unclassified Bacteria 0.428510 0.005428 0.004979 0.004344 0.001632 0.750813 0.068197 0.892664 0.032994 0.002739 0.242554 0.012891 3.469447e-18 1.017293 0.149349 0.003459 0.061392
461 superkingdom Archaea 0.001236 0.001458
462 phylum Euryarchaeota 0.001236
463 class Halobacteria 0.001236
464 phylum Unclassified Archaea 0.001458
465 superkingdom Unclassified 0.001501 0.004556
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.02965 32 90.81 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.01258 5 86.08 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.01549 6 90.05 Cytochrome c-type protein NapC
NapD 0.01577 4 67.23 Periplasmic nitrate reductase component NapD
NapE 0.01090 2 81.85 Periplasmic nitrate reductase component NapE
NapG 0.00245 1 53.30 Ferredoxin-type protein NapG (periplasmic nitrate reductase)
NarG_NxrA 0.04011 62 93.89 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.02700 20 95.28 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.02655 11 87.48 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.02238 9 79.92 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.56451 3296 82.87 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.73361 465 78.76 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.01071 8 86.79 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00991 7 93.79 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.01664 8 93.76 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.01505 11 94.56 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.50158 406 76.66 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.81126 3065 87.84 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 2.15342 691 80.74 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.09603 59 75.84 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirS 0.00108 1 82.60 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirT 0.00267 1 83.30 Cytochrome c-type protein NirT
NirU 0.34198 259 80.85 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.01643 15 90.09 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00583 4 90.35 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
UreA 2.65198 786 88.14 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.65018 810 84.24 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.56293 2818 91.31 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.01513 6 70.45 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.02953 29 86.08 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00583 4 90.35
Denitrification 0.16088 111 80.28
Nitrate assimilatory reduction 3.29812 3761 82.36
Nitrate dissimilatory reduction 0.20287 152 90.60
Nitrite assimilation 5.80823 4421 85.30
Nitrogen fixation 0.05231 34 92.39
Urease 8.86509 4414 89.45
NapD NapC NarJ NasA NapG NirT NifH_AnfH_VnfH NarH_NxrB NapA NifK_AnfK_VnfK NirS NifD_AnfD_VnfD UreB NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapE NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.015768 0.015489 0.022376 2.564511 0.00245 0.002672 0.016641 0.027002 0.029645 0.015046 0.001081 0.009912 2.650176 2.153415 2.651981 0.096027 0.015130 0.016434 2.811255 0.733608 0.040110 0.029532 3.562934 0.501579 0.010904 0.012584 0.005835 2.654637e-02 0.010706 0.341980
2 norank Unknown 0.004218 0.015596 0.009363 0.018895 0.003895
3 superkingdom Bacteria 0.015768 0.015489 0.022376 2.560293 0.00245 0.002672 0.016641 0.027002 0.029645 0.015046 0.001081 0.009912 2.618830 2.153415 2.640141 0.096027 0.015130 0.016434 2.811255 0.733608 0.040110 0.029532 3.537672 0.495244 0.010904 0.012584 0.005835 2.654637e-02 0.010706 0.341980
4 phylum Cyanobacteria 0.021483 0.007132 0.001267 0.003848
5 order Synechococcales 0.003128 0.003537
6 family Synechococcaceae 0.002079 0.003537
7 family Unclassified Synechococcales 0.001049
8 class Unclassified Cyanobacteria 0.018354 0.003595 0.001267 0.003848
9 phylum Proteobacteria 0.015768 0.015489 0.017389 1.526998 0.002672 0.012468 0.020590 0.029645 0.010948 0.005630 1.384105 1.154126 1.218249 0.057658 0.005205 0.015309 1.532134 0.577727 0.027820 0.022529 1.653417 0.221845 0.010904 0.012584 1.241625e-02 0.008148 0.223972
10 class Gammaproteobacteria 0.002397 0.128105 0.004131 0.141543 0.087194 0.117900 0.003371 0.125824 0.020432 0.007052 0.001005 0.154966
11 order Chromatiales 0.001857
12 order Xanthomonadales 0.003371
13 family Rhodanobacteraceae 0.003371
14 order Methylococcales 0.001163
15 order Oceanospirillales 0.001709 0.003276 0.003071 0.001553
16 family Halomonadaceae 0.001709 0.003276 0.003071
17 family Unclassified Oceanospirillales 0.001553
18 order Cellvibrionales 0.003402
19 family Cellvibrionaceae 0.003402
20 order Nevskiales 0.001341 0.001341
21 family Sinobacteraceae 0.001341 0.001341
22 genus Solimonas 0.001341 0.001341
23 order Pseudomonadales 0.092530 0.132273 0.067237 0.115443 0.090424 0.011526 0.000639 0.001005 0.148684
24 family Pseudomonadaceae 0.085745 0.132273 0.064055 0.111759 0.079605 0.011526 0.000639 0.001005 0.142391
25 genus Pseudomonas 0.041254 0.114063 0.041774 0.097021 0.057810 0.006590 0.000639 0.001005 0.087785
26 species Pseudomonas sp. GM16 0.000857
27 species Pseudomonas rhizosphaerae 0.003684
28 species Pseudomonas fluorescens 0.001466
29 species Pseudomonas syringae 0.000856 0.005977 0.001645
30 species Pseudomonas mandelii 0.001005
31 species Unclassified Pseudomonas 0.038075 0.114063 0.035796 0.093337 0.057810 0.004945 0.000639 0.087785
32 genus Unclassified Pseudomonadaceae 0.044491 0.018210 0.022282 0.014737 0.021795 0.004936 0.054606
33 family Unclassified Pseudomonadales 0.006785 0.003182 0.003684 0.010819 0.006293
34 order Enterobacterales 0.002397 0.002716 0.004131 0.003638 0.003205
35 family Erwiniaceae 0.002397 0.002731 0.000641
36 genus Pantoea 0.001821
37 genus Erwinia 0.002397 0.000910 0.000641
38 species Erwinia billingiae 0.002397 0.000910
39 species Unclassified Erwinia 0.000641
40 family Pectobacteriaceae 0.000623
41 family Yersiniaceae 0.000869
42 family Enterobacteriaceae 0.000579
43 genus Gibbsiella 0.000579
44 family Unclassified Enterobacterales 0.000644 0.004131 0.000907 0.002564
45 order Unclassified Gammaproteobacteria 0.029987 0.005994 0.012142 0.002457 0.029905 0.006011 0.003208 0.006282
46 class Acidithiobacillia 0.000838
47 class Alphaproteobacteria 0.003376 0.015489 0.489156 0.008294 0.001394 0.011013 0.006849 0.004223 0.471337 0.339664 0.512399 0.031981 0.005205 0.013393 0.387782 0.254817 0.003545 0.582527 0.188833 0.010904 0.012584 0.002716 0.213332
48 order Rhodospirillales 0.001836 0.001865 0.002537 0.003972
49 family Rhodospirillaceae 0.001269
50 family Acetobacteraceae 0.001269 0.001325
51 genus Granulibacter 0.001269
52 genus Unclassified Acetobacteraceae 0.001325
53 family Unclassified Rhodospirillales 0.001836 0.001865 0.002647
54 order Rhodobacterales 0.000877 0.003654 0.003402 0.025611 0.000777 0.001867 0.008166 0.003806
55 family Rhodobacteraceae 0.000877 0.003402 0.022016 0.000936 0.004899
56 genus Labrenzia 0.000936
57 genus Unclassified Rhodobacteraceae 0.000877 0.003402 0.022016 0.004899
58 family Unclassified Rhodobacterales 0.003654 0.003595 0.000777 0.000930 0.003266 0.003806
59 order Sphingomonadales 0.167715 0.007161 0.193407 0.007369 0.014207 0.166907 0.001008 0.015219 0.001358
60 family Erythrobacteraceae 0.000896 0.003182
61 genus Croceicoccus 0.003182
62 genus Unclassified Erythrobacteraceae 0.000896
63 family Sphingomonadaceae 0.148024 0.007161 0.166773 0.007369 0.014207 0.133047 0.001008 0.012684 0.001358
64 genus Sphingomonas 0.031301 0.060128 0.002030 0.029380 0.001358
65 species Sphingomonas taxi 0.003376 0.000923
66 species Sphingomonas panacis 0.001797 0.006650 0.001828
67 species Sphingomonas hengshuiensis 0.001358
68 species Unclassified Sphingomonas 0.029505 0.050102 0.002030 0.026629
69 genus Blastomonas 0.000889
70 genus Sphingobium 0.005309 0.016790 0.000915
71 genus Novosphingobium 0.000883 0.003624 0.009927 0.007335 0.002537
72 genus Sphingopyxis 0.000874 0.000928
73 genus Unclassified Sphingomonadaceae 0.108767 0.003537 0.079928 0.007369 0.012177 0.094489 0.001008 0.010146
74 family Unclassified Sphingomonadales 0.018794 0.023452 0.033860 0.002535
75 order Caulobacterales 0.019983 0.025748 0.028937
76 family Caulobacteraceae 0.019983 0.022931 0.020543
77 genus Phenylobacterium 0.000878
78 genus Caulobacter 0.005182 0.019655 0.010277
79 genus Unclassified Caulobacteraceae 0.013922 0.003276 0.010266
80 family Unclassified Caulobacterales 0.002818 0.008394
81 order Rhizobiales 0.003376 0.012895 0.189416 0.001394 0.008258 0.002733 0.303175 0.047202 0.225544 0.015745 0.005205 0.012616 0.030005 0.218489 0.340750 0.175369 0.010904 0.010070 0.001358 0.208031
82 family Methylobacteriaceae 0.004297 0.007737 0.007737 0.004954 0.002524 0.003652 0.002627
83 genus Methylobacterium 0.002577 0.007737 0.007737 0.004954 0.001267 0.003652
84 species Methylobacterium sp. GXF4 0.002640 0.002640
85 species Unclassified Methylobacterium 0.002577 0.005097 0.005097 0.004954 0.001267 0.003652
86 genus Unclassified Methylobacteriaceae 0.001719 0.001258 0.002627
87 family Aurantimonadaceae 0.000634 0.003654 0.006334
88 genus Aurantimonas 0.002533
89 genus Unclassified Aurantimonadaceae 0.000634 0.003654 0.003800
90 family Methylocystaceae 0.001737
91 genus Methylopila 0.001737
92 family Xanthobacteraceae 0.001352
93 family Bradyrhizobiaceae 0.007693 0.099880 0.007338 0.075047 0.056487 0.015745 0.002603 0.003415 0.164106 0.084729 0.116810 0.005452 0.010070 0.152043
94 genus Afipia 0.002603 0.001138 0.001664
95 genus Rhodopseudomonas 0.001727 0.010785 0.001140 0.003800 0.001327
96 species Rhodopseudomonas palustris 0.003654 0.001140
97 species Unclassified Rhodopseudomonas 0.001727 0.007131 0.003800 0.001327
98 genus Bradyrhizobium 0.008629 0.008044 0.004907 0.029822 0.002535 0.045952 0.005452 0.002528 0.024016
99 genus Bosea 0.002577 0.002505 0.008528 0.002699
100 genus Unclassified Bradyrhizobiaceae 0.007693 0.086947 0.007338 0.056217 0.051580 0.015745 0.001137 0.132620 0.075888 0.062331 0.007542 0.124001
101 family Hyphomicrobiaceae 0.000862 0.004697 0.002450 0.005074 0.001327
102 genus Devosia 0.003806
103 species Devosia sp. H5989 0.002537
104 species Unclassified Devosia 0.001269
105 genus Hyphomicrobium 0.002450 0.002450 0.001327
106 genus Unclassified Hyphomicrobiaceae 0.000862 0.002246 0.001269
107 family Beijerinckiaceae 0.002821
108 genus Methylocella 0.002821
109 family Phyllobacteriaceae 0.003283 0.010962 0.002507
110 genus Hoeflea 0.001267
111 genus Phyllobacterium 0.010962
112 genus Mesorhizobium 0.001637
113 species Mesorhizobium sp. WSM1497 0.000819
114 species Unclassified Mesorhizobium 0.000819
115 genus Unclassified Phyllobacteriaceae 0.001646 0.001240
116 family Rhizobiaceae 0.016602 0.138849 0.013606 0.010309 0.045620
117 genus Agrobacterium 0.002623
118 genus Rhizobium 0.002621 0.084040 0.003376 0.000935 0.001269
119 species Rhizobium sp. 2MFCol3.1 0.021923
120 species Unclassified Rhizobium 0.002621 0.062117 0.003376 0.000935 0.001269
121 genus Unclassified Rhizobiaceae 0.011358 0.054809 0.010231 0.009373 0.044352
122 family Unclassified Rhizobiales 0.003376 0.005202 0.062122 0.001394 0.000920 0.002733 0.062230 0.033596 0.158869 0.002603 0.009202 0.016876 0.049429 0.193962 0.054906 0.005452 0.001358 0.050681
123 order Unclassified Alphaproteobacteria 0.002594 0.111165 0.008294 0.000920 0.004116 0.004223 0.157347 0.069906 0.253876 0.002030 0.158201 0.028162 0.002538 0.220215 0.013464 0.002514 0.001329
124 class Betaproteobacteria 0.012392 0.014992 0.556693 0.002672 0.012320 0.000925 0.511063 0.593513 0.356447 0.011541 0.001138 0.660478 0.217912 0.016246 0.002992 0.563821 1.241625e-02
125 order Neisseriales 0.001308
126 family Neisseriaceae 0.001308
127 genus Neisseria 0.001308
128 order Rhodocyclales 0.001668 0.002672
129 family Zoogloeaceae 0.000834 0.002672
130 genus Azoarcus 0.002672
131 genus Unclassified Zoogloeaceae 0.000834
132 family Unclassified Rhodocyclales 0.000834
133 order Nitrosomonadales 0.009444 0.003624 0.017858 0.011053 0.013187 0.010161
134 family Sterolibacteriaceae 0.001267
135 family Methylophilaceae 0.008590 0.003624 0.017858 0.011053 0.009427 0.005089
136 genus Methylotenera 0.011053 0.000945 0.002544
137 genus Methylovorus 0.000857
138 genus Unclassified Methylophilaceae 0.007732 0.003624 0.017858 0.008482 0.002544
139 family Unclassified Nitrosomonadales 0.000854 0.003760 0.003806
140 order Burkholderiales 0.012392 0.014992 0.430661 0.012320 0.000925 0.382257 0.505800 0.220255 0.007473 0.001138 0.475487 0.202312 0.010394 0.000993 0.390292 7.453915e-03
141 family Burkholderiaceae 0.003448 0.009780 0.003897 0.002528
142 genus Burkholderia 0.000582 0.003276
143 genus Unclassified Burkholderiaceae 0.002866 0.006504 0.003897 0.002528
144 genus Rhizobacter 0.002530
145 genus Rubrivivax 0.002508
146 genus Methylibium 0.003624
147 genus Paucibacter 0.000827
148 family Alcaligenaceae 0.001703 0.003182 0.002710 0.001269
149 genus Achromobacter 0.000902
150 genus Bordetella 0.003182
151 genus Unclassified Alcaligenaceae 0.001703 0.001808 0.001269
152 family Oxalobacteraceae 0.014992 0.081269 0.010947 0.058341 0.074787 0.011053 0.007473 0.062829 0.067107 0.006501 0.091516 7.453915e-03
153 genus Massilia 0.002605 0.003482 0.003276 0.003642 0.001274
154 species Massilia sp. WG5 0.001274
155 species Unclassified Massilia 0.002605 0.003482 0.003276 0.003642
156 genus Collimonas 0.001695 0.002544
157 genus Janthinobacterium 0.004997 0.009510 0.002737 0.016464 0.019278 0.011053 0.001412 0.012671 0.011520 0.002602 0.003822
158 species Janthinobacterium sp. HH01 0.003455 0.007369
159 species Unclassified Janthinobacterium 0.004997 0.009510 0.002737 0.013010 0.019278 0.003684 0.001412 0.012671 0.011520 0.002602 0.003822
160 genus Herminiimonas 0.004245 0.006061 0.001826
161 species Herminiimonas arsenicoxydans 0.001710
162 species Unclassified Herminiimonas 0.002535 0.006061 0.001826
163 genus Duganella 0.003397 0.003455 0.000906 0.003272 0.001270
164 species Duganella zoogloeoides 0.001698 0.003455 0.001636 0.001270
165 species Unclassified Duganella 0.001698 0.000906 0.001636
166 genus Unclassified Oxalobacteraceae 0.009995 0.059816 0.008210 0.034940 0.052233 0.043784 0.052315 0.003898 0.082605 7.453915e-03
167 family Comamonadaceae 0.012392 0.148809 0.139788 0.169506 0.104864 0.126975 0.146100
168 genus Acidovorax 0.003235 0.007308 0.006409 0.007369 0.000907 0.001263
169 species Acidovorax sp. CF316 0.003654 0.001263
170 species Unclassified Acidovorax 0.003235 0.003654 0.006409 0.007369 0.000907
171 genus Ramlibacter 0.003482 0.000926
172 genus Hylemonella 0.007308
173 species Hylemonella gracilis 0.007308
174 genus Rhodoferax 0.001651 0.003654 0.003252 0.003652 0.001263
175 species Rhodoferax ferrireducens 0.000815
176 species Unclassified Rhodoferax 0.000836 0.003654 0.003252 0.003652 0.001263
177 genus Variovorax 0.008348 0.018270 0.041217 0.017371 0.034890 0.002526
178 species Variovorax sp. PAMC 28711 0.003654 0.001826 0.001263
179 species Unclassified Variovorax 0.008348 0.014616 0.041217 0.017371 0.033064 0.001263
180 genus Hydrogenophaga 0.000925
181 genus Polaromonas 0.009723 0.007308 0.011060 0.002829 0.008842
182 genus Unclassified Comamonadaceae 0.012392 0.125851 0.095941 0.107568 0.076642 0.082845 0.132206
183 family Unclassified Burkholderiales 0.194605 0.001373 0.000925 0.180504 0.248546 0.104338 0.001138 0.279077 0.135205 0.003894 0.000993 0.143841
184 order Unclassified Betaproteobacteria 0.114919 0.125182 0.069855 0.125139 0.004069 0.171804 0.015600 0.004545 0.001999 0.163368 4.962332e-03
185 class Deltaproteobacteria 0.020807 0.020807 0.001849 0.001265
186 order Myxococcales 0.013937 0.013937 0.001849 0.001265
187 family Sandaracinaceae 0.000940
188 genus Sandaracinus 0.000940
189 family Myxococcaceae 0.004620 0.004620
190 family Polyangiaceae 0.000908
191 family Unclassified Myxococcales 0.009317 0.009317 0.001265
192 order Unclassified Deltaproteobacteria 0.006870 0.006870
193 class Epsilonproteobacteria 0.002499 0.002499
194 order Campylobacterales 0.002499 0.002499
195 class Unclassified Proteobacteria 0.352206 0.004174 0.002745 0.017708 0.004099 0.001408 0.236855 0.133755 0.208197 0.010764 0.000777 0.356201 0.084566 0.004522 0.014987 0.350839 0.033012 0.005432 0.010640
196 phylum Firmicutes 0.001042 0.003537 0.010374 0.003032 0.003784 0.014577
197 class Bacilli 0.001889 0.001011 0.001265
198 order Bacillales 0.000942 0.001265
199 order Unclassified Bacilli 0.000947 0.001011
200 class Unclassified Firmicutes 0.001042 0.003537 0.008484 0.002021 0.002519 0.014577
201 phylum Deinococcus-Thermus 0.003750
202 phylum Chloroflexi 0.001081
203 class Chloroflexia 0.001081
204 order Chloroflexales 0.001081
205 family Roseiflexaceae 0.001081
206 phylum Actinobacteria 0.004987 0.453490 0.00245 0.006412 0.436485 0.706478 0.546462 0.005016 0.746704 0.125976 0.012289 0.743460 1.413012e-02
207 class Thermoleophilia 0.005249 0.005249
208 order Solirubrobacterales 0.005249 0.005249
209 family Conexibacteraceae 0.005249 0.005249
210 genus Conexibacter 0.002624 0.002624
211 genus Unclassified Conexibacteraceae 0.002624 0.002624
212 class Actinobacteria 0.004987 0.418908 0.006412 0.367396 0.644066 0.413462 0.005016 0.631847 0.123047 0.010348 0.607757 1.413012e-02
213 order Nakamurellales 0.003684 0.001272
214 family Nakamurellaceae 0.001272
215 genus Nakamurella 0.001272
216 family Unclassified Nakamurellales 0.003684
217 order Actinopolysporales 0.003252
218 family Actinopolysporaceae 0.003252
219 order Kineosporiales 0.000887
220 family Kineosporiaceae 0.000887
221 order Micrococcales 0.002564 0.012637 0.016212 0.014680 0.007369 0.002636 0.009719 0.011582 0.022707
222 family Micrococcaceae 0.003684
223 family Sanguibacteraceae 0.000878
224 genus Sanguibacter 0.000878
225 family Promicromonosporaceae 0.002456 0.003789
226 family Dermabacteraceae 0.001272
227 genus Brachybacterium 0.001272
228 family Intrasporangiaceae 0.005820
229 genus Janibacter 0.005820
230 family Jonesiaceae 0.001029
231 genus Jonesia 0.001029
232 family Microbacteriaceae 0.002564 0.003137 0.012960 0.003115 0.002636 0.001787 0.001230 0.011477
233 genus Cryobacterium 0.002091
234 genus Unclassified Microbacteriaceae 0.002564 0.001046 0.012960 0.003115 0.002636 0.001787 0.001230 0.011477
235 family Unclassified Micrococcales 0.008472 0.003252 0.005745 0.003684 0.007055 0.007897 0.006168
236 order Corynebacteriales 0.240861 0.003827 0.152614 0.433236 0.184443 0.450557 0.024512 0.002597 0.228360 4.686826e-03
237 family Mycobacteriaceae 0.009744 0.005083 0.019438 0.005083 0.014608 0.007597
238 genus Mycobacterium 0.007294 0.005083 0.006298 0.005083 0.008232 0.005056
239 genus Unclassified Mycobacteriaceae 0.002450 0.013140 0.006375 0.002541
240 family Nocardiaceae 0.187369 0.060825 0.321188 0.072134 0.324104 0.023070 0.090837
241 genus Nocardia 0.011529 0.003428 0.003137 0.003684 0.011065 0.011535 0.003784
242 species Nocardia sp. 348MFTsu5.1 0.002096 0.000921 0.001442 0.002523
243 species Unclassified Nocardia 0.009432 0.003428 0.003137 0.003684 0.010145 0.010093 0.001261
244 genus Rhodococcus 0.119552 0.023481 0.263984 0.023481 0.226186 0.026509
245 species Rhodococcus sp. B7740 0.003779
246 species Unclassified Rhodococcus 0.119552 0.023481 0.260206 0.023481 0.226186 0.026509
247 genus Smaragdicoccus 0.002836 0.000918
248 genus Unclassified Nocardiaceae 0.056289 0.033917 0.051232 0.044969 0.085934 0.011535 0.060543
249 family Gordoniaceae 0.001280 0.000647 2.340315e-03
250 genus Gordonia 2.340315e-03
251 genus Unclassified Gordoniaceae 0.001280 0.000647
252 family Unclassified Corynebacteriales 0.043748 0.002547 0.086706 0.092610 0.107225 0.111846 0.001442 0.001951 0.129927 2.346511e-03
253 order Micromonosporales 0.001106 0.002782
254 family Micromonosporaceae 0.002782
255 genus Actinoplanes 0.002782
256 family Unclassified Micromonosporales 0.001106
257 order Propionibacteriales 0.044021 0.003428 0.110391 0.003684 0.016960 0.035593 0.010158
258 family Propionibacteriaceae 0.005052
259 family Nocardioidaceae 0.037698 0.089342 0.011496 0.019593 0.001278
260 genus Kribbella 0.003325
261 genus Nocardioides 0.002189 0.015086 0.004580 0.006012
262 genus Aeromicrobium 0.009410 0.003115 0.001797
263 species Aeromicrobium erythreum 0.001046
264 species Unclassified Aeromicrobium 0.008365 0.003115 0.001797
265 genus Pimelobacter 0.001100
266 genus Unclassified Nocardioidaceae 0.024999 0.067817 0.005120 0.013581 0.001278
267 family Unclassified Propionibacteriales 0.006323 0.003428 0.021048 0.003684 0.005464 0.016000 0.003828
268 order Pseudonocardiales 0.002929 0.001449 0.003855
269 family Pseudonocardiaceae 0.003855
270 genus Lentzea 0.002570
271 genus Unclassified Pseudonocardiaceae 0.001285
272 family Unclassified Pseudonocardiales 0.002929 0.001449
273 order Streptomycetales 0.004380 0.007049 0.006776 0.000891 0.015660 0.001272
274 family Streptomycetaceae 0.002591 0.003595 0.003595 0.000891 0.009587 0.001272
275 genus Streptomyces 0.004793
276 genus Unclassified Streptomycetaceae 0.002591 0.003595 0.003595 0.000891 0.004793 0.001272
277 family Unclassified Streptomycetales 0.001790 0.003455 0.003182 0.006073
278 order Streptosporangiales 0.002574
279 family Streptosporangiaceae 0.001306
280 genus Streptosporangium 0.001306
281 family Unclassified Streptosporangiales 0.001269
282 order Frankiales 0.001621 0.021527 0.004486
283 family Frankiaceae 0.001621 0.012050 0.002735
284 genus Frankia 0.006143 0.001826
285 genus Unclassified Frankiaceae 0.001621 0.005907 0.000908
286 family Sporichthyaceae 0.000885
287 family Unclassified Frankiales 0.009477 0.000867
288 order Unclassified Actinobacteria 0.002423 0.114283 0.002585 0.182059 0.061303 0.207506 0.002380 0.148347 0.034251 0.007751 0.337558 9.443299e-03
289 class Acidimicrobiia 0.003595
290 class Unclassified Actinobacteria 0.034582 0.00245 0.063840 0.062412 0.124157 0.114857 0.002929 0.001941 0.135704
291 phylum Planctomycetes 0.004028 0.005501 0.008842 0.009671 0.007852
292 class Planctomycetia 0.002015 0.003614 0.006620
293 order Planctomycetales 0.002015 0.006620
294 family Planctomycetaceae 0.002015 0.001335
295 genus Rhodopirellula 0.001335
296 genus Schlesneria 0.002015
297 family Gemmataceae 0.001329
298 family Unclassified Planctomycetales 0.003955
299 order Unclassified Planctomycetia 0.003614
300 class Phycisphaerae 0.001232
301 order Phycisphaerales 0.001232
302 class Unclassified Planctomycetes 0.002013 0.005501 0.008842 0.006057
303 phylum Spirochaetes 0.004955 0.001828
304 class Spirochaetia 0.000914
305 class Unclassified Spirochaetes 0.004955 0.000914
306 phylum Lentisphaerae 0.004589
307 phylum Acidobacteria 0.002034 0.003809 0.002439 0.002465
308 genus Luteitalea 0.001003
309 class Acidobacteriia 0.002439 0.002465
310 order Acidobacteriales 0.002439 0.002465
311 family Acidobacteriaceae 0.002439 0.002465
312 genus Granulicella 0.001220 0.001225
313 genus Unclassified Acidobacteriaceae 0.001220 0.001240
314 class Solibacteres 0.001031
315 order Solibacterales 0.001031
316 class Unclassified Acidobacteria 0.003809
317 phylum Armatimonadetes 0.001310
318 phylum Verrucomicrobia 0.041654 0.061555 0.058949 0.007511 0.092459 0.134231 0.077768
319 class Spartobacteria 0.012145 0.002745 0.007546 0.008804 0.013528
320 order Chthoniobacterales 0.009588 0.001373 0.007546 0.007546 0.013528
321 family Chthoniobacteraceae 0.009588 0.001373 0.006289 0.007546 0.007379
322 genus Chthoniobacter 0.005113 0.001373 0.001258 0.005031 0.002460
323 genus Unclassified Chthoniobacteraceae 0.004474 0.005031 0.002515 0.004919
324 family Unclassified Chthoniobacterales 0.001258 0.006149
325 order Unclassified Spartobacteria 0.002557 0.001373 0.001258
326 class Methylacidiphilae 0.002020
327 order Methylacidiphilales 0.002020
328 family Methylacidiphilaceae 0.002020
329 genus Methylacidiphilum 0.002020
330 class Verrucomicrobiae 0.013445 0.037706 0.033159 0.018920 0.036987 0.028484
331 order Verrucomicrobiales 0.011385 0.030850 0.029474 0.013874 0.035744 0.028484
332 family Verrucomicrobia subdivision 3 0.001014 0.003700 0.001232
333 family Rubritaleaceae 0.001244 0.002612
334 family Verrucomicrobiaceae 0.007259 0.027423 0.025790 0.011352 0.025862 0.016853
335 genus Verrucomicrobium 0.004148 0.006856 0.007369 0.007568 0.018473 0.003889
336 genus Unclassified Verrucomicrobiaceae 0.003111 0.020567 0.018421 0.003784 0.007389 0.012964
337 family Unclassified Verrucomicrobiales 0.003111 0.003428 0.003684 0.002523 0.004938 0.007788
338 order Unclassified Verrucomicrobiae 0.002061 0.006856 0.003684 0.005045 0.001244
339 class Opitutae 0.007057 0.009869 0.019182 0.023206
340 order Opitutales 0.001999 0.009869 0.009550 0.018208
341 family Opitutaceae 0.001999 0.007401 0.009550 0.013395
342 genus Lacunisphaera 0.001233 0.001230
343 genus Unclassified Opitutaceae 0.001999 0.006168 0.009550 0.012165
344 family Unclassified Opitutales 0.002468 0.004813
345 order Puniceicoccales 0.003043 0.001251 0.003768
346 family Puniceicoccaceae 0.003043 0.001251
347 family Unclassified Puniceicoccales 0.003768
348 order Unclassified Opitutae 0.002014 0.008381 0.001230
349 class Unclassified Verrucomicrobia 0.009007 0.023848 0.025790 0.002745 0.056123 0.069257 0.012551
350 phylum Bacteroidetes 0.237828 0.061466 0.212663 0.091279 0.007210 0.001125 0.247620 0.005027 0.131220 0.002419 0.002793 0.005809
351 order Bacteroidetes Order II. Incertae sedis 0.001210 0.005809
352 family Rhodothermaceae 0.001210
353 family Unclassified Bacteroidetes Order II. Incertae sedis 0.005809
354 class Flavobacteriia 0.029284 0.009344 0.009151 0.003684 0.001498 0.025684 0.003001 0.001261
355 order Flavobacteriales 0.028603 0.009344 0.009151 0.003684 0.001498 0.025684 0.003001
356 family Flavobacteriaceae 0.027240 0.009344 0.009151 0.003684 0.001498 0.025684 0.003001
357 genus Flavobacterium 0.024516 0.009151 0.001498 0.024765
358 species Flavobacterium sp. CF136 0.000681
359 species Flavobacterium sp. WG21 0.001021
360 species Flavobacterium johnsoniae 0.000681
361 species Unclassified Flavobacterium 0.022132 0.009151 0.001498 0.024765
362 genus Unclassified Flavobacteriaceae 0.002724 0.009344 0.003684 0.000919 0.003001
363 family Unclassified Flavobacteriales 0.001362
364 order Unclassified Flavobacteriia 0.000681 0.001261
365 class Sphingobacteriia 0.005447 0.003071 0.055692 0.017465 0.010091 0.002793
366 order Sphingobacteriales 0.004083 0.003071 0.055692 0.011947 0.010091 0.002793
367 family Sphingobacteriaceae 0.004083 0.055692 0.007352 0.010091 0.002793
368 genus Mucilaginibacter 0.002041 0.003228 0.001261
369 genus Pedobacter 0.023028 0.004587
370 genus Solitalea 0.002793
371 genus Unclassified Sphingobacteriaceae 0.002043 0.029436 0.002765 0.008829
372 family Unclassified Sphingobacteriales 0.003071 0.004595
373 order Unclassified Sphingobacteriia 0.001363 0.005517
374 class Chitinophagia 0.022990 0.009512 0.007369 0.018327 0.003784
375 order Chitinophagales 0.020962 0.009512 0.007369 0.018327 0.002523
376 family Chitinophagaceae 0.018935 0.006504 0.007369 0.006419 0.002523
377 genus Niastella 0.003252 0.000921
378 genus Niabella 0.000677
379 genus Segetibacter 0.004057
380 genus Chitinophaga 0.007369 0.000915
381 genus Unclassified Chitinophagaceae 0.014201 0.003252 0.004583 0.002523
382 family Unclassified Chitinophagales 0.002027 0.003009 0.011908
383 order Unclassified Chitinophagia 0.002028 0.001261
384 class Cytophagia 0.105680 0.011828 0.122000 0.015512 0.001125 0.088720 0.031573
385 order Cytophagales 0.100353 0.009512 0.115590 0.013196 0.001125 0.078668 0.027789
386 family Hymenobacteraceae 0.009512 0.009512 0.000920 0.007590
387 genus Hymenobacter 0.009512 0.009512 0.003795
388 species Hymenobacter sp. PAMC 26628 0.002378 0.002378
389 species Unclassified Hymenobacter 0.007134 0.007134 0.003795
390 genus Unclassified Hymenobacteraceae 0.000920 0.003795
391 family Flammeovirgaceae 0.000913
392 family Cytophagaceae 0.090291 0.105906 0.001125 0.075923 0.010091
393 genus Spirosoma 0.007369 0.005496 0.006307
394 genus Dyadobacter 0.010811 0.035509 0.015541
395 species Dyadobacter fermentans 0.000685
396 species Unclassified Dyadobacter 0.010126 0.035509 0.015541
397 genus Fibrella 0.012636 0.000915
398 genus Unclassified Cytophagaceae 0.072111 0.057760 0.001125 0.053972 0.003784
399 family Unclassified Cytophagales 0.010063 0.009684 0.003684 0.000912 0.010109
400 order Unclassified Cytophagia 0.005327 0.002316 0.006410 0.002316 0.010052 0.003784
401 class Unclassified Bacteroidetes 0.074427 0.037223 0.016308 0.064714 0.005712 0.097424 0.002025 0.084512 0.001210
402 phylum Unclassified Bacteria 0.271736 0.004174 0.004099 0.004282 0.664551 0.074647 0.725202 0.018632 0.004969 0.255355 0.026873 0.001976 0.912065 0.101154 0.003042 3.469447e-18 0.002559 0.024113
403 superkingdom Archaea 0.002561 0.001211
404 phylum Crenarchaeota 0.001294
405 class Thermoprotei 0.001294
406 phylum Thaumarchaeota 0.001267
407 phylum Unclassified Archaea 0.001211
408 superkingdom Unclassified 0.015750 0.002478 0.003806 0.001228
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.03246 33 92.95 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.00807 3 89.93 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.03048 11 91.19 Cytochrome c-type protein NapC
NapD 0.02249 6 74.05 Periplasmic nitrate reductase component NapD
NapE 0.01758 3 79.80 Periplasmic nitrate reductase component NapE
NapG 0.00246 1 55.30 Ferredoxin-type protein NapG (periplasmic nitrate reductase)
NarG_NxrA 0.04020 58 96.05 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.03854 27 93.77 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.05594 22 85.34 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.02924 11 74.51 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.59283 3081 82.74 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.61366 367 78.54 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00587 4 83.47 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00759 5 98.80 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.01548 7 97.10 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.01315 9 92.70 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.44929 342 77.21 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.72878 2776 89.19 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.94592 584 81.86 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.11370 68 75.01 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirN 0.00154 1 98.00 Nitrite reductase associated c-type cytochorome NirN
NirS 0.00252 2 79.70 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirU 0.39750 281 81.20 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.01349 12 85.96 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00469 3 91.63 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
NrfH 0.00239 1 75.50 nrfH; cytochrome c nitrite reductase small subunit
UreA 2.47011 687 89.46 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.52497 723 85.46 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.16036 2342 91.55 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.00785 3 56.83 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.01179 11 82.25 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00708 4 87.60
Denitrification 0.15089 97 76.96
Nitrate assimilatory reduction 3.20650 3448 82.29
Nitrate dissimilatory reduction 0.27746 175 90.74
Nitrite assimilation 5.52149 3983 86.53
Nitrogen fixation 0.04210 25 93.68
Urease 8.15544 3752 89.99
NapD NapC NarJ NasA NapG NifH_AnfH_VnfH NapA NarH_NxrB NifK_AnfK_VnfK NirN NirS NrfH NifD_AnfD_VnfD UreB NirD UreA cNor-C NirK NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapE NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.022489 0.030479 0.029242 2.592832 0.002458 0.015481 0.032464 0.038543 0.013154 0.001541 0.002524 0.002392 0.007592 2.524966 1.945923 2.470112 0.007848 0.113698 0.013491 2.728778 0.613664 0.040200 0.011789 3.160359 0.449292 0.017585 0.008068 0.004686 5.593573e-02 0.005873 0.397500
2 norank Unknown 0.000897 0.005694 0.005064 0.017554
3 superkingdom Bacteria 0.022489 0.030479 0.029242 2.591935 0.002458 0.015481 0.032464 0.038543 0.013154 0.001541 0.002524 0.002392 0.007592 2.501494 1.945923 2.465047 0.007848 0.113698 0.013491 2.728778 0.613664 0.040200 0.011789 3.141453 0.447998 0.017585 0.008068 0.004686 5.593573e-02 0.005873 0.397500
4 phylum Cyanobacteria 0.020879 0.001355
5 order Synechococcales 0.002195
6 family Synechococcaceae 0.001104
7 family Unclassified Synechococcales 0.001091
8 class Unclassified Cyanobacteria 0.018684 0.001355
9 phylum Proteobacteria 0.022489 0.030479 0.007843 1.640258 0.006624 0.032464 0.024861 0.011696 0.001541 0.001368 0.006090 1.496979 1.114373 1.294883 0.002635 0.062947 0.011399 1.563825 0.506546 0.027090 0.010708 1.597261 0.222884 0.017585 0.008068 2.886457e-02 0.005873 0.264438
10 class Gammaproteobacteria 0.005720 0.002544 0.122482 0.005847 0.001541 0.001368 0.161832 0.095421 0.155504 0.005024 0.147976 0.017876 0.002056 0.002119 0.159973 5.284495e-03
11 order Xanthomonadales 0.002856
12 order Oceanospirillales 0.006893
13 family Endozoicomonaceae 0.006893
14 genus Endozoicomonas 0.006893
15 order Cellvibrionales 0.001260
16 order Pseudomonadales 0.002864 0.086977 0.001541 0.001368 0.147470 0.081087 0.149094 0.003412 0.116188 0.010368 0.151892
17 family Pseudomonadaceae 0.002864 0.079036 0.001541 0.001368 0.139643 0.074497 0.149094 0.001915 0.106261 0.010368 0.150613
18 genus Pseudomonas 0.002864 0.035899 0.001541 0.001368 0.123926 0.057883 0.129284 0.001915 0.079275 0.008615 0.085562
19 species Pseudomonas sp. Ag1 0.000920
20 species Pseudomonas fluorescens 0.001304 0.003397
21 species Unclassified Pseudomonas 0.002864 0.033675 0.001541 0.001368 0.123926 0.054485 0.129284 0.001915 0.079275 0.008615 0.085562
22 genus Unclassified Pseudomonadaceae 0.043137 0.015717 0.016614 0.019810 0.026985 0.001753 0.065051
23 family Moraxellaceae 0.001497
24 family Unclassified Pseudomonadales 0.007941 0.007827 0.006590 0.009927 0.001278
25 order Salinisphaerales 0.001611
26 family Salinisphaeraceae 0.001611
27 order Enterobacterales 0.002544 0.005722 0.005847 0.002585 0.003559 0.001282 0.002056 5.284495e-03
28 family Erwiniaceae 0.002544 0.001470 0.000974
29 genus Erwinia 0.000974
30 genus Unclassified Erwiniaceae 0.002544 0.001470
31 family Pectobacteriaceae 0.001915
32 genus Pectobacterium 0.000629
33 genus Brenneria 0.000618
34 genus Unclassified Pectobacteriaceae 0.000668
35 family Yersiniaceae 0.000687 5.284495e-03
36 genus Rahnella 0.000687 5.284495e-03
37 family Enterobacteriaceae 0.001242
38 genus Gibbsiella 0.000621
39 genus Unclassified Enterobacteriaceae 0.000621
40 family Unclassified Enterobacterales 0.002565 0.004377 0.002585 0.002585 0.001282 0.001369
41 order Unclassified Gammaproteobacteria 0.028523 0.014362 0.004856 0.006410 0.028229 0.006226 0.002119 0.008081
42 class Oligoflexia 0.001061
43 order Bdellovibrionales 0.001061
44 class Alphaproteobacteria 0.018355 0.021961 0.600727 0.004406 0.010817 0.007321 0.003004 0.643988 0.393135 0.558925 0.034131 0.009735 0.466320 0.293320 0.613938 0.181546 0.017585 0.005438 2.536812e-03 0.004417 0.257312
45 order Rhodospirillales 0.020688 0.003962 0.000998 0.005254 0.008473
46 family Rhodospirillaceae 0.007731 0.000998
47 genus Magnetospira 0.007731
48 genus Unclassified Rhodospirillaceae 0.000998
49 family Acetobacteraceae 0.007859 0.004086 0.004233
50 genus Reyranella 0.001169 0.001169
51 family Unclassified Rhodospirillales 0.003929 0.003962 0.004241
52 order Rhodobacterales 0.000935 0.018374 0.014543 0.002010 0.003481 0.001366
53 family Rhodobacteraceae 0.000935 0.015717 0.011886 0.002010 0.003481
54 genus Sagittula 0.000935
55 species Sagittula sp. P11 0.000935
56 genus Sulfitobacter 0.003929
57 genus Roseovarius 0.003929
58 genus Unclassified Rhodobacteraceae 0.007859 0.011886 0.002010 0.003481
59 family Unclassified Rhodobacterales 0.002657 0.002657 0.001366
60 order Sphingomonadales 0.237222 0.015471 0.226724 0.023737 0.205026 0.009481 0.001449
61 family Erythrobacteraceae 0.004809 0.003236
62 genus Erythrobacter 0.000959
63 genus Croceicoccus 0.001927
64 genus Unclassified Erythrobacteraceae 0.001923 0.003236
65 family Sphingomonadaceae 0.194140 0.015471 0.195376 0.021579 0.157896 0.009481 0.001449
66 genus Sphingomonas 0.039261 0.071813 0.002158 0.026437 0.001449
67 species Sphingomonas taxi 0.000958 0.007260 0.002962
68 species Sphingomonas panacis 0.000961 0.007151 0.000978
69 species Unclassified Sphingomonas 0.037342 0.057402 0.002158 0.022497 0.001449
70 genus Sphingorhabdus 0.000983
71 genus Rhizorhabdus 0.000946
72 genus Sphingobium 0.015618 0.025152 0.009803
73 species Sphingobium sp. MI1205 0.003804
74 species Unclassified Sphingobium 0.015618 0.021348 0.009803
75 genus Novosphingobium 0.002849 0.003897 0.013745 0.004916 0.002709
76 species Novosphingobium sp. AP12 0.000958
77 species Novosphingobium resinovorum 0.000945
78 species Novosphingobium sp. Rr 2-17 0.001355
79 species Unclassified Novosphingobium 0.000945 0.003897 0.013745 0.004916 0.001355
80 genus Sphingopyxis 0.000936 0.003576
81 genus Unclassified Sphingomonadaceae 0.134531 0.011574 0.081090 0.019421 0.115757 0.006772
82 family Unclassified Sphingomonadales 0.038273 0.028112 0.002158 0.047130
83 order Caulobacterales 0.038369 0.052561 0.047948
84 family Caulobacteraceae 0.034637 0.049530 0.040960
85 genus Phenylobacterium 0.000962 0.000999
86 genus Caulobacter 0.008301 0.007046 0.017993
87 species Caulobacter sp. K31 0.003523
88 species Unclassified Caulobacter 0.008301 0.003523 0.017993
89 genus Unclassified Caulobacteraceae 0.025374 0.042485 0.021968
90 family Unclassified Caulobacterales 0.003732 0.003030 0.006988
91 order Parvularculales 0.001004
92 order Rhizobiales 0.018355 0.016399 0.187154 0.007868 0.005863 0.001502 0.433951 0.065064 0.282532 0.006077 0.006084 0.041120 0.257974 0.367983 0.171563 0.011723 0.005438 0.002967 0.246013
93 family Methylobacteriaceae 0.003658 0.002797 0.002797 0.005232 0.008098 0.003919 0.001507 0.005656
94 genus Methylobacterium 0.002748 0.002797 0.002797 0.005232 0.008098 0.003919 0.004229
95 species Methylobacterium sp. 77 0.000928
96 species Methylobacterium sp. 88A 0.000910 0.004058
97 species Unclassified Methylobacterium 0.000910 0.002797 0.002797 0.005232 0.004039 0.003919 0.004229
98 genus Unclassified Methylobacteriaceae 0.000910 0.001507 0.001428
99 family Aurantimonadaceae 0.000916 0.003835 0.003472 0.002706
100 genus Aurantimonas 0.001353
101 genus Unclassified Aurantimonadaceae 0.000916 0.003835 0.003472 0.001353
102 family Methylocystaceae 0.002445
103 genus Methylocystis 0.000899
104 genus Unclassified Methylocystaceae 0.001546
105 family Xanthobacteraceae 0.000924
106 family Bradyrhizobiaceae 0.018355 0.010941 0.094911 0.003931 0.133112 0.108408 0.006077 0.001218 0.189048 0.093222 0.099665 0.011723 0.005438 0.176398
107 genus Rhodopseudomonas 0.003630 0.027505 0.001323
108 species Rhodopseudomonas palustris 0.003929
109 species Unclassified Rhodopseudomonas 0.003630 0.023576 0.001323
110 genus Bradyrhizobium 0.004612 0.003373 0.044142 0.004070 0.037805 0.011723 0.037043
111 genus Bosea 0.002759 0.002797 0.002797 0.003513 0.005351 0.002602 0.005763
112 genus Unclassified Bradyrhizobiaceae 0.014725 0.010941 0.087541 0.003931 0.099436 0.105611 0.006077 0.001218 0.141392 0.083801 0.057935 0.005438 0.133593
113 family Hyphomicrobiaceae 0.002416 0.003658 0.005019 0.001770 0.004062
114 genus Pelagibacterium 0.001004
115 genus Filomicrobium 0.001770
116 genus Devosia 0.002709
117 species Devosia sp. H5989 0.002709
118 genus Hyphomicrobium 0.002416
119 genus Unclassified Hyphomicrobiaceae 0.003658 0.004016 0.001353
120 family Phyllobacteriaceae 0.001753 0.011788 0.014632 0.015848 0.001353
121 genus Hoeflea 0.001353
122 genus Phyllobacterium 0.010974
123 genus Mesorhizobium 0.001753 0.015848
124 genus Unclassified Phyllobacteriaceae 0.011788 0.003658
125 family Rhizobiaceae 0.014835 0.149315 0.014282 0.006795 0.010019 0.035202
126 genus Neorhizobium 0.007859
127 species Neorhizobium galegae 0.007859
128 genus Rhizobium 0.062869
129 species Rhizobium sp. 2MFCol3.1 0.023576
130 species Unclassified Rhizobium 0.039293
131 genus Unclassified Rhizobiaceae 0.014835 0.078587 0.014282 0.006795 0.010019 0.035202
132 family Unclassified Rhizobiales 0.005459 0.067712 0.003937 0.005863 0.001502 0.130688 0.029021 0.148684 0.004866 0.026081 0.061924 0.223340 0.067979 0.001461 0.063958
133 order Unclassified Alphaproteobacteria 0.005562 0.137047 0.004406 0.002950 0.001458 0.001502 0.155504 0.048786 0.257888 0.004316 0.003651 0.168215 0.031865 0.229853 0.009983 0.005862 2.536812e-03 0.002826
134 class Betaproteobacteria 0.004134 0.005299 0.556415 0.004947 0.019014 0.415937 0.478652 0.292619 0.008962 0.626305 0.139848 0.017403 0.001070 0.485574 0.002629 2.104327e-02
135 order Neisseriales 0.001334
136 order Rhodocyclales 0.000904 0.003929 0.003866 0.000988
137 family Zoogloeaceae 0.000904
138 family Azonexaceae 0.003929
139 genus Dechloromonas 0.003929
140 species Dechloromonas aromatica 0.003929
141 family Rhodocyclaceae 0.000988
142 genus Rugosibacter 0.000988
143 family Unclassified Rhodocyclales 0.003866
144 order Nitrosomonadales 0.005851 0.015563 0.003686 0.015693 0.005054 0.006776
145 family Methylophilaceae 0.005851 0.010393 0.003686 0.010523 0.004042 0.004068
146 genus Methylotenera 0.000918 0.007924 0.002709
147 genus Methylovorus 0.001836 0.001359
148 genus Unclassified Methylophilaceae 0.003097 0.010393 0.003686 0.002599 0.004042
149 family Unclassified Nitrosomonadales 0.005170 0.005170 0.001011 0.002708
150 genus Candidatus Accumulibacter 0.003897
151 order Burkholderiales 0.004134 0.005299 0.442076 0.004947 0.017549 0.320607 0.413595 0.183390 0.004296 0.456962 0.127759 0.009746 0.359946 0.002629 1.051800e-02
152 family Burkholderiaceae 0.004840 0.003929 0.004788
153 genus Cupriavidus 0.002706
154 species Cupriavidus basilensis 0.001791
155 species Unclassified Cupriavidus 0.000915
156 genus Paraburkholderia 0.000626
157 genus Unclassified Burkholderiaceae 0.001508 0.003929 0.004788
158 genus Rhizobacter 0.000903 0.003603 0.001351
159 family Alcaligenaceae 0.001850 0.000969
160 genus Achromobacter 0.001850
161 genus Unclassified Alcaligenaceae 0.000969
162 family Oxalobacteraceae 0.005299 0.071551 0.016089 0.037152 0.048888 0.020528 0.004296 0.062436 0.049648 0.007658 0.065196 5.262632e-03
163 genus Massilia 0.003709 0.001665 0.001361
164 genus Janthinobacterium 0.002650 0.014767 0.001461 0.011059 0.003397 0.014608 0.003513 0.003484 0.009524
165 species Janthinobacterium sp. HH01 0.000971 0.002721
166 species Unclassified Janthinobacterium 0.002650 0.014767 0.001461 0.011059 0.003397 0.013637 0.003513 0.003484 0.006803
167 genus Herminiimonas 0.004576 0.003472 0.005863
168 species Herminiimonas arsenicoxydans 0.000915 0.003909
169 species Unclassified Herminiimonas 0.003661 0.003472 0.001954
170 genus Duganella 0.001818 0.003877
171 species Duganella zoogloeoides 0.000909 0.000969
172 species Unclassified Duganella 0.000909 0.002908
173 genus Herbaspirillum 0.000913 0.003686 0.005199
174 genus Unclassified Oxalobacteraceae 0.002650 0.045766 0.014628 0.022407 0.042019 0.020528 0.004296 0.038089 0.039271 0.004174 0.054312 5.262632e-03
175 family Comamonadaceae 0.004134 0.180451 0.001979 0.174539 0.195289 0.104356 0.161852 0.157433
176 genus Acidovorax 0.004134 0.004408 0.001979 0.003929 0.010315 0.002932
177 species Acidovorax avenae 0.000985
178 species Unclassified Acidovorax 0.004134 0.004408 0.001979 0.003929 0.010315 0.001946
179 genus Rhodoferax 0.001791 0.007826 0.006745
180 species Rhodoferax koreense 0.002931 0.005396
181 species Unclassified Rhodoferax 0.001791 0.004895 0.001349
182 genus Curvibacter 0.000884
183 genus Variovorax 0.003572 0.039293 0.059578 0.029437 0.042407 0.004047
184 species Variovorax sp. PAMC 28711 0.003929 0.000977
185 species Variovorax paradoxus 0.007859 0.003397
186 species Unclassified Variovorax 0.003572 0.027505 0.059578 0.026040 0.041429 0.004047
187 genus Hydrogenophaga 0.001779
188 genus Polaromonas 0.013847 0.007859 0.009098 0.004035 0.005396
189 species Polaromonas sp. CF318 0.000878 0.002974 0.001349
190 species Unclassified Polaromonas 0.012969 0.007859 0.006124 0.004035 0.004047
191 genus Unclassified Comamonadaceae 0.154170 0.123458 0.116299 0.074919 0.104653 0.141245
192 family Unclassified Burkholderiales 0.182481 0.002968 0.001461 0.104986 0.165815 0.058506 0.226916 0.078111 0.002088 0.135966 0.002629 5.255371e-03
193 order Unclassified Betaproteobacteria 0.107585 0.001465 0.075838 0.053608 0.093536 0.004665 0.163301 0.012089 0.007657 0.001070 0.117518 1.052526e-02
194 class Deltaproteobacteria 0.014707 0.014707 0.005404
195 order Myxococcales 0.009828 0.009828 0.001351
196 family Archangiaceae 0.001351
197 family Unclassified Myxococcales 0.009828 0.009828
198 order Unclassified Deltaproteobacteria 0.004879 0.004879 0.004053
199 class Unclassified Proteobacteria 0.002797 0.360633 0.002218 0.016700 0.004375 0.003087 0.260516 0.147165 0.273127 0.002635 0.014831 0.001664 0.323224 0.055502 0.007631 0.006457 0.332374 0.041338 3.469447e-18 0.001456 0.007126
200 phylum Firmicutes 0.001137 0.006723 0.007151 0.004057 0.002119 0.002907 0.021234
201 class Bacilli 0.001137 0.003373 0.007151 0.002119 0.002907 0.005643
202 order Bacillales 0.001137 0.003373 0.001411
203 family Bacillaceae 0.001411
204 family Paenibacillaceae 0.001137 0.003373
205 genus Paenibacillus 0.001137
206 genus Unclassified Paenibacillaceae 0.003373
207 order Unclassified Bacilli 0.007151 0.002119 0.002907 0.004233
208 class Unclassified Firmicutes 0.003350 0.004057 0.015590
209 phylum Deinococcus-Thermus 0.008003
210 class Deinococci 0.002664
211 order Thermales 0.002664
212 family Thermaceae 0.002664
213 class Unclassified Deinococcus-Thermus 0.005339
214 phylum Chloroflexi 0.001156 0.001386
215 phylum Deferribacteres 0.002458
216 phylum Actinobacteria 0.021399 0.328140 0.013682 0.442049 0.516204 0.421228 0.007517 0.655916 0.094330 0.013110 0.583138 2.707116e-02
217 class Actinobacteria 0.021399 0.298465 0.013682 0.392381 0.477436 0.330903 0.004695 0.573454 0.092784 0.011720 0.492578 2.707116e-02
218 order Nakamurellales 0.003962
219 family Nakamurellaceae 0.003962
220 genus Nakamurella 0.003962
221 species Nakamurella multipartita 0.003962
222 order Catenulisporales 0.000623
223 family Catenulisporaceae 0.000623
224 genus Catenulispora 0.000623
225 order Kineosporiales 0.000949
226 family Kineosporiaceae 0.000949
227 order Micrococcales 0.002628 0.008934 0.001384 0.009772 0.012966 0.017197 0.004695 0.021636 0.012119 0.002725 0.005450 4.721905e-03
228 family Dermacoccaceae 0.002830
229 family Promicromonosporaceae 0.003962
230 genus Isoptericola 0.003962
231 species Isoptericola dokdonensis 0.003962
232 family Dermatophilaceae 0.002672 0.002672
233 genus Kineosphaera 0.002672 0.002672
234 family Microbacteriaceae 0.002628 0.005572 0.001384 0.006219 0.003929 0.004695 0.006374 0.004237 0.002044 0.004087 4.721905e-03
235 genus Microbacterium 0.001470 0.002725
236 genus Cryobacterium 0.002628 0.001118 0.001384 0.006219 0.003755 0.006374 0.002044 4.721905e-03
237 species Cryobacterium arcticum 0.003109 0.000937 0.000681
238 species Unclassified Cryobacterium 0.002628 0.001118 0.001384 0.003109 0.002818 0.006374 0.001362 4.721905e-03
239 genus Unclassified Microbacteriaceae 0.004454 0.003929 0.000941 0.002768 0.001362
240 family Unclassified Micrococcales 0.003362 0.007100 0.006747 0.006634 0.012432 0.007882 0.000681 0.001362
241 order Corynebacteriales 0.008038 0.164378 0.005443 0.136290 0.309862 0.146000 0.385465 0.013845 0.000697 0.174152 1.738774e-02
242 family Mycobacteriaceae 0.008673 0.005279 0.010545 0.005279 0.011802 0.005409
243 genus Mycobacterium 0.006652 0.002687 0.003446 0.002687 0.007884 0.001357
244 genus Unclassified Mycobacteriaceae 0.002022 0.002592 0.007098 0.002592 0.003918 0.004053
245 family Nocardiaceae 0.125278 0.063887 0.240153 0.060456 0.256061 0.013845 0.064685
246 genus Nocardia 0.008465 0.003373 0.003962 0.006819 0.006153 0.001347
247 species Nocardia sp. 348MFTsu5.1 0.003362 0.001538
248 species Unclassified Nocardia 0.005103 0.003373 0.003962 0.006819 0.004615 0.001347
249 genus Rhodococcus 0.077648 0.033178 0.174956 0.037140 0.186771 0.013484
250 species Rhodococcus pyridinivorans 0.003962
251 species Rhodococcus sp. B7740 0.004063
252 species Unclassified Rhodococcus 0.077648 0.033178 0.170892 0.033178 0.186771 0.013484
253 genus Smaragdicoccus 0.003050
254 genus Unclassified Nocardiaceae 0.039164 0.030710 0.058775 0.019354 0.062472 0.007692 0.049853
255 family Gordoniaceae 0.001359 1.241985e-02
256 genus Gordonia 0.001359 4.967898e-03
257 genus Unclassified Gordoniaceae 7.451947e-03
258 family Tsukamurellaceae 0.001362
259 family Unclassified Corynebacteriales 0.008038 0.030426 0.005443 0.067124 0.059164 0.080266 0.117602 0.000697 0.101337 4.967898e-03
260 order Micromonosporales 0.001134
261 family Micromonosporaceae 0.001134
262 genus Verrucosispora 0.001134
263 order Propionibacteriales 0.025155 0.004244 0.073924 0.024270 0.025960 0.002698
264 family Propionibacteriaceae 0.001968 0.001349
265 genus Microlunatus 0.000984 0.001349
266 genus Unclassified Propionibacteriaceae 0.000984
267 family Nocardioidaceae 0.017539 0.004244 0.060891 0.017515 0.015575
268 genus Nocardioides 0.001170 0.022741 0.003921 0.003206
269 species Nocardioides sp. JS614 0.006561
270 species Unclassified Nocardioides 0.001170 0.016180 0.003921 0.003206
271 genus Aeromicrobium 0.001118 0.004807
272 genus Pimelobacter 0.002352
273 genus Unclassified Nocardioidaceae 0.012899 0.004244 0.038150 0.008787 0.012369
274 family Unclassified Propionibacteriales 0.005648 0.013033 0.006755 0.010385 0.001349
275 order Pseudonocardiales 0.003866 0.003009
276 family Pseudonocardiaceae 0.003866
277 family Unclassified Pseudonocardiales 0.003009
278 order Streptomycetales 0.003717 0.003866 0.000899 0.000899 0.010281
279 family Streptomycetaceae 0.001825 0.003406
280 genus Streptomyces 0.001825 0.003406
281 family Unclassified Streptomycetales 0.001891 0.003866 0.000899 0.000899 0.006875
282 order Streptosporangiales 0.000994 0.000983
283 family Streptosporangiaceae 0.000994
284 family Unclassified Streptosporangiales 0.000983
285 order Frankiales 0.010098
286 family Frankiaceae 0.003303
287 family Unclassified Frankiales 0.006795
288 order Unclassified Actinobacteria 0.010733 0.093530 0.006855 0.234344 0.069688 0.163744 0.139251 0.027571 0.008299 0.310278 4.961511e-03
289 class Acidimicrobiia 0.003866
290 class Unclassified Actinobacteria 0.029675 0.049668 0.038768 0.086459 0.002822 0.082462 0.001546 0.001390 0.090561
291 phylum Planctomycetes 0.007555 0.002542 0.004406 0.003122 0.005159 0.012759
292 class Planctomycetia 0.006427 0.001701 0.001701 0.003122 0.012759
293 order Planctomycetales 0.005350 0.001701 0.001701 0.012759
294 family Planctomycetaceae 0.002144 0.001701 0.001701
295 genus Fuerstia 0.001067
296 genus Unclassified Planctomycetaceae 0.001078 0.001701 0.001701
297 family Gemmataceae 0.004258
298 family Unclassified Planctomycetales 0.003205 0.008501
299 order Unclassified Planctomycetia 0.001078 0.003122
300 class Phycisphaerae 0.001127
301 class Unclassified Planctomycetes 0.000840 0.002704 0.005159
302 phylum Spirochaetes 0.005213
303 phylum Nitrospirae 0.001521
304 phylum Acidobacteria 0.003279 0.002038 0.002648
305 class Acidobacteriia 0.001074 0.002648
306 order Acidobacteriales 0.001074 0.002648
307 family Acidobacteriaceae 0.001074 0.001308
308 genus Granulicella 0.001074 0.001308
309 species Granulicella mallensis 0.001074
310 species Unclassified Granulicella 0.001308
311 family Unclassified Acidobacteriales 0.001340
312 class Solibacteres 0.002205 0.001019
313 order Solibacterales 0.001019
314 family Solibacteraceae 0.001019
315 genus Candidatus Solibacter 0.001019
316 order Unclassified Solibacteres 0.002205
317 class Unclassified Acidobacteria 0.001019
318 phylum Verrucomicrobia 0.036153 0.051975 0.023772 0.005860 0.065365 0.110666 0.084172
319 class Spartobacteria 0.005481 0.001465 0.004030 0.010746 0.015764
320 order Chthoniobacterales 0.004111 0.001343 0.010746 0.015764
321 family Chthoniobacteraceae 0.002740 0.001343 0.008060 0.007882
322 genus Chthoniobacter 0.002740 0.001343 0.004030 0.001314
323 genus Unclassified Chthoniobacteraceae 0.004030 0.006568
324 family Unclassified Chthoniobacterales 0.001370 0.002687 0.007882
325 order Unclassified Spartobacteria 0.001370 0.001465 0.002687
326 class Verrucomicrobiae 0.018780 0.011059 0.015848 0.016165 0.034243 0.040069
327 order Verrucomicrobiales 0.017671 0.011059 0.015848 0.014818 0.026335 0.036010
328 family Verrucomicrobia subdivision 3 0.002170
329 genus Pedosphaera 0.002170
330 family Rubritaleaceae 0.002657
331 genus Rubritalea 0.002657
332 family Verrucomicrobiaceae 0.012199 0.007373 0.011886 0.012124 0.023679 0.022148
333 genus Verrucomicrobium 0.008872 0.003686 0.003962 0.005388 0.015786 0.006921
334 species Verrucomicrobium spinosum 0.001347 0.002631
335 species Unclassified Verrucomicrobium 0.008872 0.003686 0.003962 0.004041 0.013155 0.006921
336 genus Unclassified Verrucomicrobiaceae 0.003327 0.003686 0.007924 0.006735 0.007893 0.015226
337 family Unclassified Verrucomicrobiales 0.003303 0.003686 0.003962 0.002694 0.013863
338 order Unclassified Verrucomicrobiae 0.001109 0.001347 0.007907 0.004058
339 class Opitutae 0.004340 0.023054 0.007907 0.012920 0.017870
340 order Opitutales 0.016355 0.007907 0.007681 0.012785
341 family Opitutaceae 0.016355 0.007907 0.007681 0.010382
342 genus Opitutus 0.001284
343 genus Lacunisphaera 0.003397 0.001317 0.001314
344 genus Unclassified Opitutaceae 0.012958 0.006590 0.006397 0.009069
345 family Unclassified Opitutales 0.002402
346 order Puniceicoccales 0.002170 0.001336 0.002683
347 family Puniceicoccaceae 0.001336 0.002683
348 family Unclassified Puniceicoccales 0.002170
349 order Unclassified Opitutae 0.002170 0.006699 0.003903 0.002402
350 class Unclassified Verrucomicrobia 0.007552 0.017862 0.007924 0.004395 0.037263 0.052757 0.010469
351 phylum Bacteroidetes 0.287748 0.071919 0.255031 0.158149 0.007712 0.327869 0.001081 0.107785 0.001292 0.001490 0.010102
352 order Bacteroidetes Order II. Incertae sedis 0.010102
353 class Flavobacteriia 0.039392 0.003303 0.029525 0.004672 0.031410 0.001081 0.002694
354 order Flavobacteriales 0.037932 0.003303 0.029525 0.003146 0.031410 0.001081 0.002694
355 family Flavobacteriaceae 0.037932 0.029525 0.003146 0.031410 0.002694
356 genus Flavobacterium 0.034283 0.026244 0.001598 0.029448
357 species Flavobacterium sp. CF136 0.002919 0.000982
358 species Unclassified Flavobacterium 0.031364 0.026244 0.001598 0.028466
359 genus Elizabethkingia 0.001347
360 genus Unclassified Flavobacteriaceae 0.003649 0.003281 0.001548 0.001962 0.001347
361 family Unclassified Flavobacteriales 0.003303 0.001081
362 order Unclassified Flavobacteriia 0.001459 0.001526
363 class Sphingobacteriia 0.004373 0.042327 0.003962 0.039490 0.028289 0.001490
364 order Sphingobacteriales 0.003644 0.038804 0.003962 0.033556 0.025594 0.001490
365 family Sphingobacteriaceae 0.003644 0.035281 0.003962 0.024699 0.025594
366 genus Sphingobacterium 0.003523
367 genus Mucilaginibacter 0.003962 0.004941 0.001347
368 species Mucilaginibacter paludis 0.001347
369 species Unclassified Mucilaginibacter 0.003962 0.004941
370 genus Pedobacter 0.028236 0.008884
371 species Pedobacter sp. BAL39 0.003523
372 species Unclassified Pedobacter 0.024713 0.008884
373 genus Unclassified Sphingobacteriaceae 0.003644 0.003523 0.010874 0.024247
374 family Unclassified Sphingobacteriales 0.003523 0.008857 0.001490
375 order Unclassified Sphingobacteriia 0.000729 0.003523 0.005934 0.002694
376 class Chitinophagia 0.031120 0.006584 0.003236 0.003962 0.006860 0.006735
377 order Chitinophagales 0.028232 0.003236 0.003962 0.006860 0.005388
378 family Chitinophagaceae 0.026782 0.003236 0.003962 0.002947 0.005388
379 genus Niastella 0.000713 0.000985 0.002694
380 genus Niabella 0.007236
381 genus Segetibacter 0.002899
382 genus Filimonas 0.003236
383 genus Chitinophaga 0.003962
384 genus Unclassified Chitinophagaceae 0.015934 0.001961 0.002694
385 family Unclassified Chitinophagales 0.001450 0.003914
386 order Unclassified Chitinophagia 0.002888 0.006584 0.001347
387 class Cytophagia 0.137222 0.038677 0.124556 0.039289 0.131193 0.017531
388 order Cytophagales 0.125093 0.038677 0.121085 0.039289 0.123343 0.016184
389 family Hymenobacteraceae 0.035327 0.035327 0.002702
390 genus Hymenobacter 0.020187 0.020187 0.002702
391 species Hymenobacter sp. PAMC 26628 0.002523 0.002523
392 species Unclassified Hymenobacter 0.017664 0.017664 0.002702
393 genus Unclassified Hymenobacteraceae 0.015140 0.015140
394 family Cyclobacteriaceae 0.000988
395 genus Indibacter 0.000988
396 family Cytophagaceae 0.113692 0.103727 0.097874 0.008082
397 genus Spirosoma 0.003519 0.003472 0.005875 0.002694
398 genus Dyadobacter 0.012969 0.031244 0.020551
399 species Dyadobacter fermentans 0.001450
400 species Unclassified Dyadobacter 0.011518 0.031244 0.020551
401 genus Fibrella 0.003397
402 genus Unclassified Cytophagaceae 0.097204 0.065613 0.071447 0.005388
403 family Unclassified Cytophagales 0.011401 0.003350 0.017358 0.003962 0.024481 0.005400
404 order Unclassified Cytophagia 0.012128 0.003472 0.007850 0.001347
405 class Unclassified Bacteroidetes 0.075642 0.023354 0.055388 0.110936 0.003040 0.118915 0.052536 0.001292
406 phylum Unclassified Bacteria 0.266786 0.008857 0.001458 0.002392 0.001502 0.431849 0.057773 0.559865 0.028141 0.002092 0.170667 0.007547 0.783641 0.077374 0.003196 0.023382
407 superkingdom Archaea 0.001294
408 superkingdom Unclassified 0.017778 0.001351
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.02910 40 93.54 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.00772 3 81.77 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.01724 8 95.44 Cytochrome c-type protein NapC
NapE 0.00886 2 83.45 Periplasmic nitrate reductase component NapE
NapF 0.00756 3 84.23 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NapG 0.01204 6 74.18 Ferredoxin-type protein NapG (periplasmic nitrate reductase)
NapH 0.00175 1 79.20 Polyferredoxin NapH (periplasmic nitrate reductase)
NarG_NxrA 0.19922 396 95.14 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.20667 189 95.08 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.18273 90 85.68 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.17036 86 86.70 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 3.20391 5203 84.52 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.62835 566 82.16 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00674 6 89.22 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00793 7 91.99 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.00338 2 99.00 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.00436 4 70.20 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.23873 247 76.71 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 3.42933 4788 90.14 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 2.41111 947 82.95 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.30768 224 83.46 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirN 0.00672 6 82.48 Nitrite reductase associated c-type cytochorome NirN
NirS 0.00102 1 93.90 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirU 0.19653 189 80.67 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.05659 64 87.85 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.01567 14 85.74 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
NrfH 0.01573 7 86.41 nrfH; cytochrome c nitrite reductase small subunit
UreA 1.90706 693 93.44 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 1.94459 718 88.83 ureB; urease subunit beta [EC:3.5.1.5]
UreC 2.91391 2900 93.35 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.02011 7 77.17 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.12768 153 85.98 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.03139 21 85.97
Denitrification 0.51978 455 84.84
Nitrate assimilatory reduction 3.83227 5769 84.29
Nitrate dissimilatory reduction 0.84326 824 92.85
Nitrite assimilation 6.27569 6171 88.21
Nitrogen fixation 0.02241 19 87.26
Urease 6.76556 4311 92.61
NapC NarJ NasA NapG NapH NifH_AnfH_VnfH NapA NarH_NxrB NifK_AnfK_VnfK NirN NirS NrfH NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapE NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.017243 1.703602e-01 3.203912 0.012042 0.001747 0.003378 0.029100 0.206674 0.004360 0.006718 0.001016 0.015727 0.007926 1.944594 0.007562 2.411110 1.907063 0.307675 0.020111 0.056589 3.429328 0.628354 0.199220 0.127675 2.913905e+00 0.238729 0.008863 0.007715 0.015666 0.182729 0.006744 0.196528
2 norank Unknown 0.010846 9.005083e-03 0.000992
3 superkingdom Bacteria 0.017243 1.703602e-01 3.203912 0.012042 0.001747 0.003378 0.029100 0.206674 0.004360 0.006718 0.001016 0.015727 0.007926 1.933748 0.007562 2.411110 1.907063 0.307675 0.020111 0.056589 3.429328 0.628354 0.198577 0.127675 2.904900e+00 0.234276 0.008863 0.007715 0.015666 0.182729 0.006744 0.196528
4 phylum Cyanobacteria 0.000820 1.006701e-03
5 order Synechococcales 0.000820 1.006701e-03
6 family Synechococcaceae 0.000820 1.006701e-03
7 phylum Proteobacteria 0.017243 1.683259e-01 2.447725 0.005984 0.001747 0.003378 0.027601 0.204546 0.001087 0.006718 0.001016 0.004516 1.529615 0.007562 1.997559 1.375016 0.235108 0.010104 0.045598 2.889190 0.586136 0.198068 0.088242 2.061018e+00 0.113630 0.008863 0.007715 0.002404 0.178879 0.005458 0.122868
8 class Gammaproteobacteria 0.008908 1.212206e-01 0.535743 0.001904 0.010862 0.124847 0.005634 0.001016 0.530959 0.005163 0.529697 0.458139 0.035775 0.005366 0.001838 0.711577 0.089831 0.117338 0.014562 5.958319e-01 0.002552 0.118264
9 order Methylococcales 0.000454
10 family Methylococcaceae 0.000454
11 order Oceanospirillales 0.002465
12 order Alteromonadales 0.001301
13 family Alteromonadaceae 0.001301
14 order Cellvibrionales 0.004088 0.003572
15 family Cellvibrionaceae 0.003637 0.003572
16 genus Cellvibrio 0.001816 0.002858
17 genus Unclassified Cellvibrionaceae 0.001821 0.000714
18 family Unclassified Cellvibrionales 0.000451
19 order Nevskiales 0.002242 1.986989e-03
20 family Sinobacteraceae 0.002242 1.986989e-03
21 order Pseudomonadales 0.008908 7.593365e-03 0.405772 0.006512 0.001099 0.004508 0.001016 0.525380 0.381465 0.458139 0.030621 0.005366 0.001838 0.485004 0.029735 0.003994 0.008262 5.687128e-01
22 family Pseudomonadaceae 0.008908 5.695024e-03 0.375385 0.005788 0.001099 0.004508 0.001016 0.510178 0.343192 0.454119 0.030621 0.005366 0.000926 0.445427 0.024886 0.003495 0.006677 5.366347e-01
23 genus Pseudomonas 0.008908 3.796683e-03 0.199342 0.005065 0.001099 0.004508 0.001016 0.407246 0.223670 0.344406 0.017425 0.005366 0.000926 0.298508 0.013012 0.003495 0.005092 2.957888e-01
24 species Pseudomonas sp. GM16 0.002694
25 species Pseudomonas sp. Ag1 0.002024
26 species Pseudomonas fluorescens 0.001822
27 species Pseudomonas mendocina 0.000673 0.013078
28 species Pseudomonas stutzeri 0.001106 1.011182e-03
29 species Unclassified Pseudomonas 0.008908 3.796683e-03 0.192130 0.005065 0.001099 0.004508 0.001016 0.407246 0.223670 0.344406 0.004347 0.005366 0.000926 0.298508 0.011905 0.003495 0.005092 2.947776e-01
30 genus Azotobacter 0.000674
31 genus Unclassified Pseudomonadaceae 1.898341e-03 0.175369 0.000724 0.102932 0.119522 0.109712 0.013196 0.146919 0.011874 0.001585 2.408459e-01
32 family Unclassified Pseudomonadales 1.898341e-03 0.030387 0.000724 0.015202 0.038272 0.004021 0.000912 0.039577 0.004849 0.000499 0.001585 3.207815e-02
33 order Enterobacterales 1.017213e-01 0.046592 0.001904 0.001456 0.098498 0.005163 0.093915 0.114932 0.038214 0.082149 0.075430
34 family Erwiniaceae 4.894731e-02 0.001394 0.001456 0.021914 0.005163 0.035865 0.049181 0.004082 0.014022 0.010233
35 genus Pantoea 0.001394 0.001456 0.005163 0.000466 0.001179 0.000466
36 genus Erwinia 4.308348e-02 0.019723 0.031394 0.042351 0.002260 0.011017 0.008186
37 species Erwinia billingiae 2.545842e-02 0.008766 0.026486 0.027921 0.007512 0.006140
38 species Unclassified Erwinia 1.762506e-02 0.010957 0.004908 0.014430 0.002260 0.003505 0.002047
39 genus Unclassified Erwiniaceae 5.863831e-03 0.002191 0.004004 0.005651 0.001356 0.003005 0.002047
40 family Pectobacteriaceae 9.626227e-03 0.001337
41 genus Pectobacterium 9.626227e-03
42 genus Brenneria 0.000449
43 species Brenneria goodwinii 0.000449
44 genus Unclassified Pectobacteriaceae 0.000888
45 family Yersiniaceae 1.958340e-03 0.010257 0.001904 0.025774 0.021249 0.010889 0.003002
46 genus Rahnella 0.003415 0.005747 0.006074 0.002718 0.001501
47 genus Serratia 0.001259 0.001259
48 genus Unclassified Yersiniaceae 1.958340e-03 0.006843 0.001904 0.018769 0.013916 0.008171 0.001501
49 family Enterobacteriaceae 0.002898 0.004395
50 genus Kosakonia 0.001195
51 genus Gibbsiella 0.001096
52 genus Unclassified Enterobacteriaceae 0.001703 0.003300
53 family Unclassified Enterobacterales 4.118938e-02 0.030705 0.072189 0.032276 0.044503 0.023244 0.065125 0.065197
54 order Unclassified Gammaproteobacteria 1.190600e-02 0.078836 0.002894 0.025249 0.001126 0.005579 0.054317 0.002912 0.108069 0.018116 0.031195 0.006300 2.513209e-02 0.002552 0.042834
55 class Oligoflexia 0.002404
56 order Bdellovibrionales 0.002404
57 family Bdellovibrionaceae 0.001202
58 family Unclassified Bdellovibrionales 0.001202
59 class Alphaproteobacteria 0.589245 0.001687 0.001442 0.001121 0.247123 0.002400 0.361409 0.211857 0.000964 0.000900 0.497234 0.126327 0.001005 0.003243 3.318223e-01 0.094257 0.004173 0.005163 0.001130 0.118625
60 order Rhodospirillales 0.000698 0.002400 0.011297 0.001559 0.002683 3.021593e-03 0.003154
61 family Rhodospirillaceae 0.005648 0.000734
62 genus Azospirillum 0.005648 0.000734
63 family Acetobacteraceae 0.002683 3.021593e-03 0.001050
64 genus Acetobacter 1.008190e-03
65 genus Unclassified Acetobacteraceae 0.002683 2.013403e-03 0.001050
66 family Unclassified Rhodospirillales 0.000698 0.002400 0.005648 0.000825 0.002104
67 order Rhodobacterales 0.000699 0.008403 0.000732
68 order Sphingomonadales 0.292949 0.005579 0.228689 0.005648 0.241501 1.509458e-02
69 family Erythrobacteraceae 0.004243 0.002900
70 genus Croceicoccus 0.001415
71 genus Unclassified Erythrobacteraceae 0.002828 0.002900
72 family Sphingomonadaceae 0.255361 0.005579 0.202325 0.005648 0.196786 9.055858e-03
73 genus Sphingomonas 0.047815 0.062787 0.034590 1.005217e-03
74 species Sphingomonas taxi 0.000703 0.005177 0.004355
75 species Sphingomonas panacis 0.002119 0.012334 0.001438
76 species Sphingomonas hengshuiensis 0.000699
77 species Sphingomonas sp. JJ-A5 0.000720
78 species Sphingomonas sp. LM7 0.002588
79 species Sphingomonas sanxanigenens 1.005217e-03
80 species Unclassified Sphingomonas 0.044294 0.042688 0.028077
81 genus Blastomonas 0.000699
82 genus Rhizorhabdus 0.000732
83 genus Sphingobium 0.015998 0.026567 0.002883
84 species Sphingobium sp. MI1205 0.002712
85 species Sphingobium sp. YBL2 0.001022
86 species Unclassified Sphingobium 0.014976 0.023855 0.002883
87 genus Novosphingobium 0.012614 0.023044 0.013710
88 species Novosphingobium sp. AP12 0.000704
89 species Novosphingobium resinovorum 0.002776 0.005177
90 species Unclassified Novosphingobium 0.009134 0.017868 0.013710
91 genus Sphingopyxis 0.002788 0.003084 0.001461
92 genus Unclassified Sphingomonadaceae 0.175446 0.005579 0.086842 0.005648 0.143410 8.050641e-03
93 family Unclassified Sphingomonadales 0.033344 0.023464 0.044714 6.038723e-03
94 order Caulobacterales 0.055628 0.051454 0.041831
95 family Caulobacteraceae 0.052219 0.036751 0.032292
96 genus Phenylobacterium 0.002794 0.002938
97 genus Brevundimonas 0.000713
98 genus Caulobacter 0.012858 0.005664 0.010281
99 species Caulobacter sp. K31 0.002702 0.002208
100 species Unclassified Caulobacter 0.010156 0.005664 0.008073
101 genus Asticcacaulis 0.002049
102 genus Unclassified Caulobacteraceae 0.034518 0.031087 0.018361
103 family Unclassified Caulobacterales 0.003409 0.014703 0.009539
104 order Rhizobiales 0.123064 0.000721 0.183813 0.037521 0.114665 0.000964 0.000900 0.028748 0.105008 0.002454 1.899558e-01 0.089377 0.004173 0.005163 0.115471
105 family Methylobacteriaceae 0.002027 2.003075e-03 0.002907 0.003167
106 genus Methylobacterium 0.002027 2.003075e-03 0.002907 0.003167
107 family Methylocystaceae 0.000448
108 family Xanthobacteraceae 0.004334 0.004334 0.001075
109 genus Starkeya 0.002163 0.002163
110 genus Azorhizobium 0.002170 0.002170
111 genus Unclassified Xanthobacteraceae 0.001075
112 family Bradyrhizobiaceae 0.053407 0.044099 0.041543 0.089042 5.222844e-02 0.057348 0.004173 0.005163 0.080591
113 genus Afipia 0.001331
114 genus Rhodopseudomonas 0.016671 0.001318 1.008190e-03 0.001055
115 species Rhodopseudomonas palustris 0.002801
116 species Unclassified Rhodopseudomonas 0.013870 0.001318 1.008190e-03 0.001055
117 genus Bradyrhizobium 0.004745 0.011967 4.029784e-03 0.019044 0.004173 0.018022
118 genus Bosea 0.002700 0.001321 0.001933 0.004293
119 species Bosea sp. PAMC 26642 0.001321
120 species Unclassified Bosea 0.002700 0.001933 0.004293
121 genus Unclassified Bradyrhizobiaceae 0.045962 0.027428 0.041543 0.073105 4.719046e-02 0.036370 0.005163 0.057220
122 family Hyphomicrobiaceae 0.002801 0.001334 3.017134e-03
123 genus Devosia 1.006701e-03
124 species Devosia sp. H5989 1.006701e-03
125 genus Hyphomicrobium 0.001334 2.010433e-03
126 genus Unclassified Hyphomicrobiaceae 0.002801
127 family Beijerinckiaceae 0.000740
128 genus Methylocella 0.000740
129 family Phyllobacteriaceae 0.002613 0.002628 1.005217e-03
130 genus Hoeflea 1.005217e-03
131 genus Mesorhizobium 0.001937
132 genus Unclassified Phyllobacteriaceae 0.000677 0.002628
133 family Rhizobiaceae 0.020493 0.081229 0.014804 0.015474 1.910505e-02
134 genus Neorhizobium 0.002801
135 genus Rhizobium 0.007549 0.039214 0.006112
136 species Rhizobium sp. 2MFCol3.1 0.008403
137 species Unclassified Rhizobium 0.007549 0.030811 0.006112
138 genus Unclassified Rhizobiaceae 0.012944 0.039214 0.008693 0.015474 1.910505e-02
139 family Unclassified Rhizobiales 0.044074 0.000721 0.051351 0.020089 0.068788 0.000964 0.000900 0.012535 0.014632 0.002454 1.125969e-01 0.029122 0.030638
140 order Unclassified Alphaproteobacteria 0.116207 0.001687 0.000721 0.001121 0.049327 0.043745 0.080246 0.182863 0.018635 0.001005 0.000790 1.237504e-01 0.004880 0.001130
141 class Betaproteobacteria 0.004233 4.514691e-02 0.885705 0.004081 0.001747 0.003631 0.027267 0.576624 0.833071 0.357883 0.124319 0.034399 1.024918 0.317213 0.047132 0.032967 6.881695e-01 0.004690 0.058574 0.001068
142 order Rhodocyclales 0.000660 0.002824 0.000727
143 family Zoogloeaceae 0.000660 0.002824
144 genus Azoarcus 0.002824
145 genus Unclassified Zoogloeaceae 0.000660
146 family Rhodocyclaceae 0.000727
147 genus Rugosibacter 0.000727
148 order Nitrosomonadales 0.062171 0.004081 0.001747 0.044233 0.063797 0.014121 0.082465 5.452293e-02
149 family Methylophilaceae 0.054980 0.004081 0.001747 0.044233 0.063797 0.014121 0.077298 3.836799e-02
150 genus Methylophilus 0.003226 0.004081 0.005339 0.003539 1.009684e-03
151 genus Methylotenera 0.028861 0.005556 0.018256 0.008473 0.025789 1.514526e-02
152 species Methylotenera mobilis 0.000684
153 species Unclassified Methylotenera 0.028177 0.005556 0.018256 0.008473 0.025789 1.514526e-02
154 genus Methylovorus 0.000673 0.005467 3.029052e-03
155 genus Unclassified Methylophilaceae 0.022220 0.001747 0.033338 0.040073 0.005648 0.047969 1.918400e-02
156 family Unclassified Nitrosomonadales 0.007190 0.005167 1.615494e-02
157 order Burkholderiales 0.002116 4.310036e-02 0.672979 0.003631 0.020728 0.450155 0.656523 0.228332 0.094223 0.029867 0.724669 0.297584 0.024317 0.012550 4.972480e-01 0.004690 0.046398
158 family Burkholderiaceae 0.013134 0.015262 0.002135 2.011927e-03
159 genus Cupriavidus 0.000657
160 genus Burkholderia 0.000445 1.008190e-03
161 genus Ralstonia 0.002673 0.006195 0.000711
162 species Ralstonia insidiosa 0.000668
163 species Unclassified Ralstonia 0.002005 0.006195 0.000711
164 genus Unclassified Burkholderiaceae 0.009360 0.009067 0.001424 1.003736e-03
165 family Alcaligenaceae 0.003002 0.001421
166 family Oxalobacteraceae 3.706243e-02 0.194236 0.007624 0.099510 0.191026 0.034656 0.086896 0.022650 0.179735 0.117819 0.017739 0.002364 1.101829e-01 0.030479
167 genus Massilia 0.007457 0.012183 0.000911 0.006458 0.007699 1.011182e-03
168 genus Collimonas 0.004246
169 genus Janthinobacterium 1.436301e-02 0.017619 0.001089 0.013458 0.006057 0.006892 0.011396 0.011887 0.002032 0.000788 7.078274e-03 0.006085
170 species Janthinobacterium sp. HH01 2.046544e-03 0.000671 0.002649 0.001427
171 species Unclassified Janthinobacterium 1.231647e-02 0.016948 0.001089 0.010809 0.006057 0.006892 0.009969 0.011887 0.002032 0.000788 7.078274e-03 0.006085
172 genus Herminiimonas 0.025904 0.024230 0.049030 0.030881
173 species Herminiimonas arsenicoxydans 0.007363 0.003029 0.006537 0.005027
174 species Unclassified Herminiimonas 0.018542 0.021201 0.042492 0.025854
175 genus Duganella 0.006669 0.010594 0.015279 0.008473 0.004273 0.006553 4.032762e-03
176 species Duganella zoogloeoides 0.004001 0.009168 0.005648 0.000712 0.003932
177 species Unclassified Duganella 0.002668 0.010594 0.006112 0.002824 0.003561 0.002621 4.032762e-03
178 genus Herbaspirillum 0.004009 0.007967 0.002976 0.002118 0.009103
179 genus Unclassified Oxalobacteraceae 2.269942e-02 0.132578 0.006536 0.067491 0.130301 0.026183 0.030974 0.021739 0.120362 0.082576 0.015708 0.001576 9.806071e-02 0.024394
180 family Comamonadaceae 0.002116 1.856965e-03 0.246670 0.206315 0.216983 0.110941 0.002279 0.204808 0.002621 0.000769 2.069130e-01 0.004690 0.003714
181 genus Acidovorax 0.001293 0.002801 0.011707 0.004296 0.001308
182 species Acidovorax sp. RAC01 0.002801
183 species Acidovorax sp. KKS102 0.000647
184 species Unclassified Acidovorax 0.000645 0.011707 0.004296 0.001308
185 genus Ramlibacter 0.002900 0.002669
186 genus Diaphorobacter 0.003714
187 genus Rhodoferax 0.002626 0.008817 0.006470 4.998210e-03
188 species Rhodoferax saidenbachensis 0.002888
189 species Rhodoferax koreense 0.000657 3.006781e-03
190 species Unclassified Rhodoferax 0.001970 0.005930 0.006470 1.991429e-03
191 genus Comamonas 0.002116 0.004690
192 species Comamonas testosteroni 0.002116
193 species Unclassified Comamonas 0.004690
194 genus Variovorax 0.009172 0.030811 0.044587 0.026406 0.031873 5.011301e-03
195 species Variovorax paradoxus 0.008403 0.002989 0.000717
196 species Variovorax boronicumulans 1.002260e-03
197 species Unclassified Variovorax 0.009172 0.022408 0.044587 0.023417 0.031156 4.009041e-03
198 genus Hydrogenophaga 0.002863 0.000730
199 genus Polaromonas 0.037659 0.045112 0.010992 0.001140 0.004436 0.000769 1.503390e-02
200 species Polaromonas sp. CF318 0.005602 0.001140 2.004520e-03
201 species Polaromonas naphthalenivorans 0.005602 0.000727
202 species Polaromonas sp. JS666 2.004520e-03
203 species Unclassified Polaromonas 0.037659 0.033908 0.010992 0.003710 0.000769 1.102486e-02
204 genus Unclassified Comamonadaceae 1.856965e-03 0.195920 0.127590 0.135116 0.081865 0.001140 0.157003 0.001313 1.818696e-01
205 genus Leptothrix 0.000734
206 genus Roseateles 0.000722
207 family Unclassified Burkholderiales 4.180967e-03 0.218939 0.003631 0.013103 0.144331 0.230250 0.082735 0.005048 0.007217 0.335113 0.177144 0.006577 0.009417 1.781401e-01 0.012206
208 order Unclassified Betaproteobacteria 0.002116 2.046544e-03 0.149895 0.006539 0.082236 0.112751 0.112606 0.030096 0.004533 0.217057 0.019629 0.022816 0.020418 1.363986e-01 0.012176 0.001068
209 class Deltaproteobacteria 0.007490 0.007490 0.001153
210 order Myxococcales 0.005623 0.005623
211 order Unclassified Deltaproteobacteria 0.001867 0.001867 0.001153
212 class Unclassified Proteobacteria 0.004101 1.958340e-03 0.437032 0.001691 0.011666 0.052432 0.001087 0.001084 0.003395 0.167420 0.273383 0.339648 0.074049 0.004738 0.008460 0.655461 0.051612 0.032592 0.037470 4.451942e-01 0.019374 0.002040 0.003259 0.004243
213 phylum Firmicutes 0.001287 0.002824 2.004525e-03 0.003150
214 class Clostridia 0.002824 1.000789e-03
215 order Clostridiales 1.000789e-03
216 order Unclassified Clostridia 0.002824
217 class Bacilli 0.000818 1.003736e-03
218 order Bacillales 0.000818 1.003736e-03
219 class Unclassified Firmicutes 0.000469 0.003150
220 phylum Deinococcus-Thermus 0.001966
221 phylum Actinobacteria 2.034327e-03 0.055410 0.001036 0.083550 0.066246 0.065327 0.055159 0.036980 0.000509 1.064126e-01 0.003850
222 class Actinobacteria 2.034327e-03 0.044400 0.001036 0.067644 0.057743 0.054790 0.041087 0.035780 0.000509 9.132811e-02 0.003850
223 order Geodermatophilales 0.000709
224 family Geodermatophilaceae 0.000709
225 order Nakamurellales 0.002824
226 order Micrococcales 0.004195 0.002065 0.005800 0.010538 0.006163 0.012482 1.198016e-02
227 family Micrococcaceae 0.000698
228 genus Kocuria 0.000698
229 family Dermatophilaceae 0.002065 0.002065
230 genus Kineosphaera 0.002065 0.002065
231 family Microbacteriaceae 0.000825 0.002824 0.001322 0.002949 6.076106e-03
232 genus Microbacterium 1.012684e-03
233 genus Cryobacterium 0.000825 0.001322 0.000975
234 species Cryobacterium sp. LW097 0.000975
235 species Unclassified Cryobacterium 0.000825 0.001322
236 genus Unclassified Microbacteriaceae 0.002824 0.001974 5.063422e-03
237 family Unclassified Micrococcales 0.003370 0.005800 0.005648 0.004143 0.009533 5.904058e-03
238 order Corynebacteriales 0.008897 0.005384 0.019623 0.011643 0.001149 7.022171e-03 0.001914
239 family Mycobacteriaceae 0.002427 0.002801 0.002895
240 genus Mycobacterium 0.001427 0.002801
241 genus Unclassified Mycobacteriaceae 0.001000 0.002895
242 family Nocardiaceae 0.003642 0.011034 0.004368 0.001149 1.000789e-03
243 genus Nocardia 0.005339 0.002175 0.001149
244 genus Rhodococcus 0.000919 0.005696 0.002193 1.000789e-03
245 genus Unclassified Nocardiaceae 0.002723
246 family Gordoniaceae 1.006701e-03
247 genus Gordonia 1.006701e-03
248 family Tsukamurellaceae 2.025369e-03
249 genus Tsukamurella 1.012684e-03
250 genus Unclassified Tsukamurellaceae 1.012684e-03
251 family Unclassified Corynebacteriales 0.002829 0.005384 0.005788 0.004379 2.989313e-03 0.001914
252 order Micromonosporales 0.000837
253 family Micromonosporaceae 0.000837
254 order Propionibacteriales 0.009288 0.004286 0.011649 0.004286 0.000706 0.008030 2.028383e-03
255 family Propionibacteriaceae 0.002143 0.002143
256 genus Microlunatus 0.002143 0.002143
257 family Nocardioidaceae 0.007594 0.011649 0.000706 0.005772 1.014191e-03
258 genus Nocardioides 0.005850 0.001200
259 genus Aeromicrobium 0.000706 0.001157
260 genus Unclassified Nocardioidaceae 0.007594 0.005800 0.003415 1.014191e-03
261 family Unclassified Propionibacteriales 0.001694 0.002143 0.002143 0.002258 1.014191e-03
262 order Pseudonocardiales 0.003056 0.001417
263 family Pseudonocardiaceae 0.001417
264 genus Actinomycetospora 0.001417
265 family Unclassified Pseudonocardiales 0.003056
266 order Streptomycetales 0.001362 0.003895
267 family Streptomycetaceae 0.001362 0.001279
268 family Unclassified Streptomycetales 0.002616
269 order Streptosporangiales 0.001920 0.001920 0.001103
270 family Streptosporangiaceae 0.001920 0.001920
271 family Unclassified Streptosporangiales 0.001103
272 order Frankiales 0.000447 0.005875 0.001369
273 family Frankiaceae 0.005875 0.001369
274 genus Frankia 0.005875 0.001369
275 family Sporichthyaceae 0.000447
276 genus Sporichthya 0.000447
277 order Unclassified Actinobacteria 2.034327e-03 0.018664 0.001036 0.053989 0.011740 0.035222 0.019789 0.009120 0.000509 7.029739e-02 0.001936
278 class Unclassified Actinobacteria 0.011009 0.015905 0.008503 0.010538 0.014072 0.001200 1.508448e-02
279 phylum Planctomycetes 0.017488 0.001500 0.000623 0.001250 3.005309e-03 0.001913 0.004151
280 class Planctomycetia 0.015903 0.000623 0.000623 2.003049e-03 0.000959 0.003175
281 order Planctomycetales 0.011922 1.002260e-03 0.000959 0.003175
282 family Planctomycetaceae 0.008753 1.002260e-03 0.001062
283 genus Rhodopirellula 0.000790 0.001062
284 genus Schlesneria 0.002383
285 genus Unclassified Planctomycetaceae 0.005580 1.002260e-03
286 family Gemmataceae 0.002113
287 family Unclassified Planctomycetales 0.003169 0.000959
288 order Unclassified Planctomycetia 0.003982 0.000623 0.000623 1.000789e-03
289 class Phycisphaerae 0.000976
290 order Phycisphaerales 0.000976
291 family Phycisphaeraceae 0.000976
292 class Unclassified Planctomycetes 0.001584 0.001500 0.000627 1.002260e-03 0.000955
293 phylum Lentisphaerae 0.000806 0.001444
294 class Lentisphaeria 0.000806
295 class Unclassified Lentisphaerae 0.001444
296 phylum Acidobacteria 0.000750 0.002900 0.001942
297 class Acidobacteriia 0.000967 0.000971
298 order Acidobacteriales 0.000967 0.000971
299 family Acidobacteriaceae 0.000967
300 genus Granulicella 0.000967
301 family Unclassified Acidobacteriales 0.000971
302 class Unclassified Acidobacteria 0.000750 0.001933 0.000971
303 phylum Armatimonadetes 0.001041
304 phylum Verrucomicrobia 0.022801 0.068203 0.056484 9.803939e-02 0.064067 0.054338
305 class Spartobacteria 0.003994 0.005648 0.000998 0.007800
306 order Chthoniobacterales 0.002497 0.005648 0.000998 0.007800
307 family Chthoniobacteraceae 0.001498 0.002824 0.004875
308 genus Chthoniobacter 0.000999
309 genus Unclassified Chthoniobacteraceae 0.000499 0.002824 0.004875
310 family Unclassified Chthoniobacterales 0.000999 0.002824 0.000998 0.002925
311 order Unclassified Spartobacteria 0.001498
312 class Verrucomicrobiae 0.003273 0.007885 0.022594 1.701341e-02 0.006866 0.015397
313 order Verrucomicrobiales 0.003273 0.007885 0.019769 1.401104e-02 0.006866 0.014391
314 family Rubritaleaceae 0.002959 0.002075
315 genus Rubritalea 0.001973
316 genus Unclassified Rubritaleaceae 0.000986 0.002075
317 family Verrucomicrobiaceae 0.002455 0.005256 0.008473 9.007097e-03 0.002929
318 genus Verrucomicrobium 0.001636 0.008473 1.000789e-03 0.000976
319 genus Unclassified Verrucomicrobiaceae 0.000818 0.005256 8.006308e-03 0.001953
320 family Unclassified Verrucomicrobiales 0.000818 0.002628 0.011297 5.003943e-03 0.000978 0.012317
321 order Unclassified Verrucomicrobiae 0.002824 3.002366e-03 0.001005
322 class Opitutae 0.003952 0.005715 0.002824 2.933448e-03 0.011423 0.021265
323 order Opitutales 0.002364 0.005715 0.002824 9.778161e-04 0.008535 0.018297
324 family Opitutaceae 0.001576 0.002726 0.002824 9.778161e-04 0.007583 0.009642
325 family Unclassified Opitutales 0.000788 0.002989 0.000952 0.008655
326 order Puniceicoccales 0.000800 0.001993
327 family Puniceicoccaceae 0.000800
328 family Unclassified Puniceicoccales 0.001993
329 order Unclassified Opitutae 0.000788 1.955632e-03 0.002888 0.000975
330 class Unclassified Verrucomicrobia 0.011582 0.054604 0.025418 7.809254e-02 0.044780 0.009877
331 phylum Bacteroidetes 0.357641 0.013276 0.036208 0.314765 0.080137 0.022560 0.010007 0.007061 0.400278 0.022296 6.098867e-02 0.000959 0.012230 0.001286 0.002177
332 order Bacteroidetes Order II. Incertae sedis 0.002177
333 family Rhodothermaceae 0.002177
334 genus Rhodothermus 0.002177
335 class Flavobacteriia 0.143849 0.005926 0.090592 0.019769 0.016728 0.002673 0.110406 0.007953 9.007097e-03
336 order Flavobacteriales 0.142252 0.005926 0.090592 0.016945 0.016728 0.002673 0.107520 0.006359 7.005520e-03
337 family Flavobacteriaceae 0.139589 0.005926 0.090592 0.016945 0.014337 0.001782 0.105355 0.003169 5.003943e-03
338 genus Flavobacterium 0.128133 0.090592 0.011297 0.011672 0.001782 0.097418
339 species Flavobacterium sp. CF136 0.003727 0.011649 0.002888
340 species Flavobacterium gilvum 0.001599 0.000723
341 species Flavobacterium johnsoniae 0.011699
342 species Unclassified Flavobacterium 0.122807 0.067244 0.011297 0.011672 0.001782 0.093807
343 genus Unclassified Flavobacteriaceae 0.011456 0.005926 0.005648 0.002665 0.007937 0.003169 5.003943e-03
344 family Unclassified Flavobacteriales 0.002663 0.002391 0.000891 0.002164 0.003190 2.001577e-03
345 order Unclassified Flavobacteriia 0.001597 0.002824 0.002886 0.001594 2.001577e-03
346 class Sphingobacteriia 0.013832 0.013276 0.014687 0.149168 0.008473 0.080353 1.595318e-02 0.012230
347 order Sphingobacteriales 0.012236 0.013276 0.005875 0.146099 0.008473 0.055706 1.301025e-02 0.012230
348 family Sphingobacteriaceae 0.011173 0.013276 0.005875 0.137098 0.008473 0.031132 9.007097e-03 0.011118
349 genus Sphingobacterium 0.003056
350 genus Mucilaginibacter 0.002659 0.008780 0.005648 0.005085 2.001577e-03
351 species Mucilaginibacter paludis 0.000532 0.002875
352 species Unclassified Mucilaginibacter 0.002127 0.005904 0.005648 0.005085 2.001577e-03
353 genus Pedobacter 0.000533 0.091773 0.007228
354 species Pedobacter sp. BAL39 0.006112
355 species Pedobacter steynii 0.000533
356 species Unclassified Pedobacter 0.085661 0.007228
357 genus Solitalea 0.013276 0.005559
358 species Solitalea canadensis 0.006638
359 species Unclassified Solitalea 0.006638 0.005559
360 genus Unclassified Sphingobacteriaceae 0.007981 0.005875 0.033489 0.002824 0.018820 7.005520e-03 0.005559
361 family Unclassified Sphingobacteriales 0.001064 0.009001 0.024574 4.003154e-03 0.001112
362 order Unclassified Sphingobacteriia 0.001595 0.008812 0.003070 0.024646 2.942930e-03
363 class Chitinophagia 0.048508 0.005926 0.005755 1.000789e-03
364 order Chitinophagales 0.039533 0.005926 0.003603 1.000789e-03
365 family Chitinophagaceae 0.033195 0.005926 0.002883 1.000789e-03
366 genus Niastella 0.002601 1.000789e-03
367 genus Niabella 0.005281
368 genus Segetibacter 0.001586
369 genus Chitinophaga 0.000526 0.000720
370 genus Unclassified Chitinophagaceae 0.023201 0.005926 0.002164
371 family Unclassified Chitinophagales 0.006338 0.000720
372 order Unclassified Chitinophagia 0.008975 0.002152
373 class Cytophagia 0.052123 0.003883 0.054398 0.003883 0.002652 0.033087 6.004731e-03
374 order Cytophagales 0.048436 0.003883 0.051369 0.003883 0.031648 6.004731e-03
375 family Hymenobacteraceae 0.003883 0.003883
376 genus Hymenobacter 0.003883 0.003883
377 species Hymenobacter sp. PAMC 26628 0.001942 0.001942
378 species Unclassified Hymenobacter 0.001942 0.001942
379 family Cytophagaceae 0.045289 0.042322 0.031648 6.004731e-03
380 genus Spirosoma 0.003076 0.001442 5.003943e-03
381 genus Dyadobacter 0.003130 0.021201 0.008624
382 genus Fibrella 0.002989
383 genus Cytophaga 0.002164
384 genus Unclassified Cytophagaceae 0.039083 0.018133 0.019418 1.000789e-03
385 family Unclassified Cytophagales 0.003147 0.009046
386 order Unclassified Cytophagia 0.003686 0.003029 0.002652 0.001439
387 class Unclassified Bacteroidetes 0.099330 0.011712 0.014681 0.048011 0.005832 0.007355 0.004388 0.170677 0.014343 2.902287e-02 0.000959 0.001286
388 phylum Unclassified Bacteria 2.775558e-17 0.299936 0.006057 0.001092 0.003273 0.002451 0.003410 0.216172 0.031916 0.327275 0.050007 0.003929 0.081258 0.005238 0.017137 5.724250e-01 0.044651 0.001033 0.011052
389 superkingdom Archaea 0.000643 0.002481
390 phylum Euryarchaeota 0.000643 0.001496
391 phylum Unclassified Archaea 0.000985
392 superkingdom Unclassified 4.440892e-16 0.000979
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.01638 13 86.73 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.01320 3 93.90 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.00385 1 90.00 Cytochrome c-type protein NapC
NapD 0.00509 1 73.50 Periplasmic nitrate reductase component NapD
NapF 0.00430 1 63.30 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NapG 0.01253 4 53.50 Ferredoxin-type protein NapG (periplasmic nitrate reductase)
NarG_NxrA 0.05182 60 94.03 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.04789 26 93.71 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.04878 14 82.72 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.02746 8 86.55 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.87118 2597 81.63 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.55471 271 77.29 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00565 3 92.00 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00784 4 100.00 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.00293 1 98.00 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.00376 2 95.00 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.51970 307 74.51 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.80760 2247 87.32 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 2.21788 452 80.16 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.08877 41 75.37 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirN 0.00390 2 89.00 Nitrite reductase associated c-type cytochorome NirN
NirU 0.38247 212 78.91 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.01983 13 88.15 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00809 4 87.00 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
UreA 2.52173 553 88.69 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.48893 536 84.28 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.34081 1924 90.32 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.01407 4 54.10 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.05024 37 86.11 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00809 4 87.00
Denitrification 0.17682 97 80.58
Nitrate assimilatory reduction 3.42589 2868 81.22
Nitrate dissimilatory reduction 0.23131 131 89.91
Nitrite assimilation 5.92766 3218 84.54
Nitrogen fixation 0.02019 10 96.40
Urease 8.35147 3013 88.95
NapD NapC NarJ NasA NapG NifH_AnfH_VnfH NarH_NxrB NapA NifK_AnfK_VnfK NirN NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.005086 0.003851 0.027463 2.871181e+00 0.012530 0.002931 0.047893 0.016383 0.003762 0.003899 0.007845 2.488933 0.004302 2.217883 2.521732 0.088773 0.01407 0.019834 2.807600 0.554707 0.051818 0.050242 3.340808 0.519703 0.013196 0.008087 4.878405e-02 0.005649 3.824697e-01
2 norank Unknown 1.962503e-03 0.040040 0.018112 0.010435 0.001716
3 superkingdom Bacteria 0.005086 0.003851 0.027463 2.869218e+00 0.012530 0.002931 0.047893 0.016383 0.003762 0.003899 0.007845 2.424424 0.004302 2.217883 2.496678 0.088773 0.01407 0.019834 2.807600 0.554707 0.051818 0.050242 3.328634 0.511121 0.013196 0.008087 4.878405e-02 0.005649 3.824697e-01
4 phylum Cyanobacteria 4.194467e-02 0.001719
5 order Oscillatoriales 1.404882e-03
6 order Synechococcales 0.001719
7 family Synechococcaceae 0.001719
8 class Unclassified Cyanobacteria 4.053978e-02
9 phylum Proteobacteria 0.005086 0.003851 0.020691 1.818500e+00 0.006329 0.046003 0.016383 0.003762 0.003899 0.005905 1.213801 0.004302 1.486502 1.256695 0.050946 0.018295 1.910156 0.372348 0.042206 0.043415 1.408405 0.183142 0.013196 3.876968e-02 0.005649 2.071250e-01
10 class Gammaproteobacteria 0.003851 0.013593 1.684013e-01 0.013904 0.001251 0.003899 0.167078 0.209682 0.129590 0.001537 0.212726 0.054847 0.016208 0.002716 0.185772 0.001711 1.419747e-02
11 order Chromatiales 1.164360e-03 0.001711
12 family Ectothiorhodospiraceae 1.164360e-03 0.001711
13 order Xanthomonadales 3.503481e-03 0.001537 0.001747
14 family Rhodanobacteraceae 3.503481e-03 0.001537 0.001747
15 genus Frateuria 0.001747
16 genus Unclassified Rhodanobacteraceae 3.503481e-03 0.001537
17 order Cellvibrionales 3.921413e-03 0.016304 0.001235
18 family Cellvibrionaceae 3.921413e-03 0.016304 0.001235
19 genus Cellvibrio 3.129370e-03 0.016304
20 genus Unclassified Cellvibrionaceae 7.920438e-04 0.001235
21 order Thiotrichales 0.009670
22 family Thiotrichaceae 0.009670
23 genus Thiothrix 0.004835
24 genus Unclassified Thiotrichaceae 0.004835
25 order Pseudomonadales 1.107261e-01 0.003899 0.147777 0.161182 0.129590 0.152543 0.036170 0.001726 0.171793
26 family Pseudomonadaceae 9.903849e-02 0.003899 0.133389 0.142047 0.129590 0.135086 0.020210 0.001726 0.163160
27 genus Pseudomonas 4.187718e-02 0.003899 0.100143 0.100926 0.086394 0.083787 0.015627 0.001726 0.084512
28 species Pseudomonas sp. Ag1 2.333338e-03
29 species Unclassified Pseudomonas 3.954384e-02 0.003899 0.100143 0.100926 0.086394 0.083787 0.015627 0.001726 0.084512
30 genus Azotobacter 1.165513e-03
31 genus Unclassified Pseudomonadaceae 5.599580e-02 0.033247 0.041121 0.043197 0.051299 0.004583 0.078648
32 family Moraxellaceae 5.697750e-03 0.009592 0.009100 0.009100 0.005244
33 genus Acinetobacter 5.697750e-03 0.009592 0.009100 0.009100 0.005244
34 family Unclassified Pseudomonadales 5.989855e-03 0.004796 0.010035 0.017457 0.006861 0.003389
35 order Salinisphaerales 1.178353e-03
36 family Salinisphaeraceae 1.178353e-03
37 order Enterobacterales 0.013593 1.236778e-02 0.013904 0.010527 0.012455 0.004708 0.011887 1.064810e-02
38 family Erwiniaceae 0.007048 0.005276 0.001562 0.000865 3.549367e-03
39 genus Erwinia 0.005485 0.003714 0.000865 3.549367e-03
40 species Erwinia billingiae 0.005485 0.001238 3.549367e-03
41 species Unclassified Erwinia 0.002476 0.000865
42 genus Unclassified Erwiniaceae 0.001562 0.001562 0.001562
43 family Pectobacteriaceae 0.003406 3.120073e-03
44 genus Pectobacterium 0.003406
45 genus Brenneria 2.329095e-03
46 genus Unclassified Pectobacteriaceae 7.909789e-04
47 family Yersiniaceae 1.180718e-03 0.000782 0.000782 0.000782 0.000865
48 family Enterobacteriaceae 1.649132e-03 0.001902 0.001739
49 family Unclassified Enterobacterales 0.010187 6.417860e-03 0.012002 0.002698 0.006398 0.002364 0.008418 7.098734e-03
50 order Unclassified Gammaproteobacteria 0.003851 3.553983e-02 0.001251 0.009631 0.021669 0.046493 0.013969 0.002595 0.002716 0.012232 3.549367e-03
51 class Acidithiobacillia 2.274694e-03
52 order Acidithiobacillales 2.274694e-03
53 family Acidithiobacillaceae 2.274694e-03
54 class Alphaproteobacteria 7.431837e-01 0.003753 0.001940 0.498845 0.004302 0.544245 0.529473 0.004317 0.008923 0.625648 0.177138 0.002728 0.466103 0.136785 0.001893 1.998198e-01
55 order Magnetococcales 0.005414
56 order Rhodospirillales 0.004302 0.001269 0.002323 0.005249 0.001726 5.468291e-03
57 family Rhodospirillaceae 0.004302 0.001269
58 family Acetobacteraceae 0.002323 0.001771 0.001726
59 family Unclassified Rhodospirillales 0.003478 5.468291e-03
60 order Rhodobacterales 1.195110e-03 0.010870 0.009751 0.001053 0.002540 0.002265 0.003484
61 family Rhodobacteraceae 1.195110e-03 0.010870 0.009751 0.002265 0.003484
62 genus Pannonibacter 0.009751
63 species Pannonibacter phragmitetus 0.009751
64 genus Unclassified Rhodobacteraceae 1.195110e-03 0.010870 0.002265 0.003484
65 family Unclassified Rhodobacterales 0.001053 0.002540
66 order Sphingomonadales 2.929017e-01 0.039096 0.273497 0.009751 0.223351 0.002728 0.015666
67 family Erythrobacteraceae 7.342193e-03 0.010078
68 genus Croceicoccus 2.447398e-03
69 genus Unclassified Erythrobacteraceae 4.894795e-03 0.010078
70 family Sphingomonadaceae 2.272733e-01 0.039096 0.211056 0.009751 0.172148 0.002728 0.015666
71 genus Sphingomonas 3.650039e-02 0.026877 0.028679
72 species Sphingomonas taxi 1.216110e-03
73 species Sphingomonas panacis 2.442317e-03 0.005361 0.003729
74 species Sphingomonas hengshuiensis 1.208615e-03
75 species Unclassified Sphingomonas 3.163335e-02 0.021516 0.024950
76 genus Sphingorhabdus 0.001250
77 genus Blastomonas 1.208615e-03
78 genus Sphingobium 1.205642e-02 0.010321 0.025864 0.001240 0.003481
79 genus Novosphingobium 1.199986e-03 0.019183 0.015969 0.009751 0.006247
80 species Novosphingobium resinovorum 1.199986e-03
81 species Unclassified Novosphingobium 0.019183 0.015969 0.009751 0.006247
82 genus Sphingopyxis 1.206809e-02 0.026778 0.010052
83 species Sphingopyxis macrogoltabida 0.001255
84 species Unclassified Sphingopyxis 1.206809e-02 0.026778 0.008797
85 genus Unclassified Sphingomonadaceae 1.642398e-01 0.009592 0.115568 0.124679 0.002728 0.012185
86 family Unclassified Sphingomonadales 5.828618e-02 0.052363 0.051203
87 order Caulobacterales 1.059663e-01 0.114985 0.077448
88 family Caulobacteraceae 9.531132e-02 0.088496 0.054582
89 genus Phenylobacterium 1.222427e-03 0.019329 0.002540
90 genus Caulobacter 7.028015e-03 0.021470 0.005076
91 genus Unclassified Caulobacteraceae 8.706088e-02 0.047697 0.046967
92 family Unclassified Caulobacterales 1.065503e-02 0.026489 0.022866
93 order Rhizobiales 1.651342e-01 0.003753 0.317771 0.081374 0.252382 0.001893 0.006292 0.053562 0.151819 0.255763 0.121849 0.001893 1.943515e-01
94 family Methylobacteriaceae 2.325396e-03 0.014782 0.014782 0.003453 0.006690
95 genus Methylobacterium 1.154081e-03 0.007530 0.007530 0.003453 0.006690
96 genus Unclassified Methylobacteriaceae 1.171315e-03 0.007251 0.007251
97 family Aurantimonadaceae 1.162060e-03
98 family Bradyrhizobiaceae 7.833101e-02 0.117483 0.099456 0.124233 0.069527 0.066663 1.266664e-01
99 genus Rhodopseudomonas 1.172482e-03 0.014506 0.002282 0.005213 0.001699 3.645527e-03
100 species Rhodopseudomonas palustris 1.172482e-03
101 species Unclassified Rhodopseudomonas 0.014506 0.002282 0.005213 0.001699 3.645527e-03
102 genus Bradyrhizobium 8.179433e-03 0.017380 0.017380 0.018390 0.006978 0.029974 2.936903e-02
103 genus Bosea 3.501165e-03 0.004530 0.005157 0.001672 3.714583e-03
104 genus Unclassified Bradyrhizobiaceae 6.547793e-02 0.085598 0.082076 0.099030 0.052180 0.033317 8.993724e-02
105 family Hyphomicrobiaceae 0.004835 0.010215 0.008704 3.651184e-03
106 genus Pelagibacterium 0.002554
107 genus Devosia 0.001742
108 species Devosia sp. H5989 0.001742
109 genus Hyphomicrobium 0.001739
110 genus Unclassified Hyphomicrobiaceae 0.004835 0.007661 0.005223 3.651184e-03
111 family Beijerinckiaceae 0.002559
112 genus Methylocella 0.002559
113 family Phyllobacteriaceae 1.082913e-03 0.038682 0.010920 0.009751 0.001702
114 genus Chelativorans 0.004835
115 genus Mesorhizobium 0.009670 0.009751
116 genus Unclassified Phyllobacteriaceae 1.082913e-03 0.024176 0.010920 0.001702
117 family Rhizobiaceae 1.649935e-02 0.067693 0.027150 0.006377 0.015661
118 genus Neorhizobium 0.004835
119 genus Rhizobium 2.373345e-03 0.029011 0.003481
120 species Rhizobium sp. 2MFCol3.1 0.009670
121 species Unclassified Rhizobium 2.373345e-03 0.019341 0.003481
122 genus Unclassified Rhizobiaceae 1.412600e-02 0.033847 0.027150 0.006377 0.012180
123 family Unclassified Rhizobiales 6.573349e-02 0.003753 0.074296 0.043304 0.128394 0.001893 0.006292 0.034411 0.027586 0.156717 0.048496 0.001893 6.403390e-02
124 order Unclassified Alphaproteobacteria 1.779864e-01 0.001940 0.141978 0.063520 0.252177 0.002423 0.001578 0.267480 0.020731 0.185942 0.013209 2.775558e-17
125 class Betaproteobacteria 0.005086 0.007099 5.443020e-01 0.016975 0.002513 0.337693 0.508631 0.299545 0.024973 0.009371 0.688050 0.109544 0.021009 0.020229 0.417414 0.013196 2.113684e-02
126 order Neisseriales 0.001905 0.001244
127 family Neisseriaceae 0.001905
128 family Unclassified Neisseriales 0.001244
129 order Rhodocyclales 0.004796 0.001256 0.002703
130 family Zoogloeaceae 0.004796
131 family Rhodocyclaceae 0.002703
132 genus Rugosibacter 0.001352
133 species Rugosibacter aromaticivorans 0.001352
134 genus Unclassified Rhodocyclaceae 0.001352
135 family Unclassified Rhodocyclales 0.001256
136 order Nitrosomonadales 2.438574e-02 0.021299 0.004975 0.016662 0.041119 0.013976
137 family Sterolibacteriaceae 0.003435 0.003435
138 family Methylophilaceae 2.242505e-02 0.013068 0.008351 0.039545 0.013976
139 genus Methylophilus 1.592665e-03
140 genus Methylotenera 5.798845e-03 0.003476 0.008351 0.011454 0.006988
141 genus Methylovorus 1.164360e-03
142 genus Unclassified Methylophilaceae 1.386918e-02 0.009592 0.028091 0.006988
143 family Unclassified Nitrosomonadales 1.960692e-03 0.004796 0.004975 0.004875 0.001574
144 genus Candidatus Accumulibacter 0.004835 0.001737
145 order Burkholderiales 0.005086 0.007099 4.104616e-01 0.011310 0.002513 0.253634 0.462337 0.214750 0.010533 0.007795 0.446342 0.098227 0.013114 0.009409 0.304565 0.013196 7.045614e-03
146 family Burkholderiaceae 1.280713e-02 0.003518 0.003518 0.002218 0.001737
147 genus Paraburkholderia 7.841260e-04 0.003518 0.003518
148 genus Burkholderia 3.128173e-03 0.002218
149 genus Unclassified Burkholderiaceae 8.894835e-03 0.001737
150 genus Rhizobacter 0.001240 0.003473
151 genus Rubrivivax 0.004875
152 genus Thiomonas 0.001271
153 family Alcaligenaceae 1.155214e-03
154 family Oxalobacteraceae 0.007099 1.150538e-01 0.009426 0.021565 0.078698 0.014626 0.010533 0.004672 0.095906 0.029486 0.007004 0.001363 0.043609 3.517533e-03
155 genus Massilia 0.005312 0.001242 0.001164 0.001750
156 genus Collimonas 1.151821e-03 0.004875
157 genus Janthinobacterium 8.168124e-03 0.005265 0.001557 0.008633 0.004574 0.000879 0.001750
158 species Janthinobacterium sp. HH01 2.321827e-03 0.001234
159 species Unclassified Janthinobacterium 5.846297e-03 0.005265 0.001557 0.007399 0.004574 0.000879 0.001750
160 genus Herminiimonas 1.372651e-02 0.026323 0.005664 0.023594
161 species Herminiimonas arsenicoxydans 3.441851e-03 0.009934
162 species Unclassified Herminiimonas 1.028466e-02 0.026323 0.005664 0.013660
163 genus Duganella 1.152950e-03 0.002269
164 species Duganella zoogloeoides 1.152950e-03
165 species Unclassified Duganella 0.002269
166 genus Herbaspirillum 0.005511 0.001221 0.004470 0.001750
167 genus Unclassified Oxalobacteraceae 0.007099 9.085439e-02 0.009426 0.016054 0.036923 0.014626 0.004869 0.003115 0.061216 0.017009 0.006124 0.001363 0.038361 3.517533e-03
168 family Comamonadaceae 0.005086 1.438324e-01 0.110100 0.181782 0.108532 0.120091 0.002274 0.000854 0.100347 0.013196
169 genus Acidovorax 0.005086 1.118959e-03 0.004981 0.013196
170 genus Ramlibacter 0.005511
171 genus Hylemonella 0.001260
172 genus Rhodoferax 3.405457e-03 0.015755 0.015865 0.003749 0.001734
173 species Rhodoferax saidenbachensis 0.010920
174 species Rhodoferax koreense 0.001734
175 species Unclassified Rhodoferax 3.405457e-03 0.004835 0.015865 0.003749
176 genus Curvibacter 0.002274
177 genus Comamonas 0.001234
178 genus Variovorax 9.065928e-03 0.019341 0.036411 0.010070 0.021290 0.003468
179 species Variovorax paradoxus 0.004835
180 species Unclassified Variovorax 9.065928e-03 0.014506 0.036411 0.010070 0.021290 0.003468
181 genus Hydrogenophaga 0.000854
182 genus Polaromonas 1.312596e-02 0.004835 0.004773 0.003850 0.005202
183 species Polaromonas sp. JS666 0.001284 0.001734
184 species Unclassified Polaromonas 1.312596e-02 0.004835 0.004773 0.002566 0.003468
185 genus Unclassified Comamonadaceae 1.171161e-01 0.070169 0.124733 0.092950 0.083726 0.089942
186 genus Roseateles 0.002497 0.001734
187 family Unclassified Burkholderiales 1.376131e-01 0.001884 0.002513 0.118452 0.201857 0.083200 0.003123 0.225337 0.064249 0.005257 0.008046 0.153665 3.528081e-03
188 order Unclassified Betaproteobacteria 1.094547e-01 0.005664 0.053129 0.041319 0.068133 0.012535 0.001576 0.198088 0.011317 0.007895 0.008117 0.097137 1.409123e-02
189 class Deltaproteobacteria 1.437494e-03 0.016437 0.005336 0.016437 0.005978 0.001737
190 order Myxococcales 0.013173 0.005336 0.013173 0.005978
191 family Anaeromyxobacteraceae 0.003237 0.003237
192 family Unclassified Myxococcales 0.009936 0.005336 0.009936 0.005978
193 order Unclassified Deltaproteobacteria 1.437494e-03 0.003264 0.003264 0.001737
194 class Unclassified Proteobacteria 3.589007e-01 0.006329 0.015124 0.008866 0.003762 0.003965 0.193748 0.218607 0.281650 0.020119 0.383732 0.024841 0.004990 0.017742 0.337379 0.044646 3.435369e-03 0.003756 7.305274e-03
195 phylum Firmicutes 8.100388e-04 0.015448 0.003861 0.002833 0.007211 0.029376
196 class Bacilli 8.100388e-04 0.010299 0.002833 0.003751 0.001817
197 order Bacillales 8.100388e-04 0.010299
198 family Paenibacillaceae 8.100388e-04 0.010299
199 genus Paenibacillus 8.100388e-04
200 genus Unclassified Paenibacillaceae 0.010299
201 order Unclassified Bacilli 0.002833 0.003751 0.001817
202 class Unclassified Firmicutes 0.005149 0.003861 0.003461 0.027559
203 phylum Deinococcus-Thermus 0.010306
204 phylum Actinobacteria 0.006772 2.677511e-01 0.493515 0.388458 0.387773 0.331339 0.142252 0.009611 0.739937 0.001559 1.001437e-02
205 class Thermoleophilia 0.003741 0.003741 0.001734
206 order Solirubrobacterales 0.003741 0.003741
207 family Conexibacteraceae 0.003741 0.003741
208 order Unclassified Thermoleophilia 0.001734
209 class Actinobacteria 0.006772 2.417081e-01 0.414162 0.298776 0.333593 0.258990 0.135813 0.009611 0.564026 1.001437e-02
210 order Geodermatophilales 1.189071e-03
211 family Geodermatophilaceae 1.189071e-03
212 order Nakamurellales 2.499388e-03
213 family Nakamurellaceae 1.249694e-03
214 family Unclassified Nakamurellales 1.249694e-03
215 order Catenulisporales 7.830822e-04
216 order Micrococcales 2.104436e-02 0.039558 0.004773 0.024376 0.007087 0.014004 0.001744 0.015189
217 family Micrococcaceae 2.798071e-03 0.001956
218 family Cellulomonadaceae 0.004875
219 family Promicromonosporaceae 2.717032e-03 0.005039 0.009751 0.006710
220 genus Isoptericola 0.005039 0.009751 0.001784
221 genus Unclassified Promicromonosporaceae 2.717032e-03 0.004926
222 family Dermatophilaceae 0.001177
223 family Intrasporangiaceae 0.001744
224 genus Janibacter 0.001744
225 family Microbacteriaceae 7.189052e-03 0.015865 0.004875 0.001181 0.003381 0.008761
226 genus Microbacterium 1.480918e-03 0.010577 0.004875 0.001752
227 genus Cryobacterium 2.854067e-03 0.001181 0.003381
228 genus Unclassified Microbacteriaceae 2.854067e-03 0.005288 0.007009
229 family Unclassified Micrococcales 8.340210e-03 0.018655 0.004773 0.004875 0.004729 0.001956 0.006428
230 order Corynebacteriales 4.205753e-02 0.074182 0.055617 0.069974 0.101351 0.007924 0.098915
231 family Mycobacteriaceae 2.230576e-02 0.033397 0.036036 0.028716 0.038651 0.027872
232 genus Mycobacterium 1.076008e-02 0.011911 0.020762 0.007230 0.028755 0.013932
233 genus Unclassified Mycobacteriaceae 1.154567e-02 0.021486 0.015274 0.021486 0.009895 0.013940
234 family Nocardiaceae 1.237797e-02 0.003718 0.014664 0.003718 0.022684 0.005968 0.008668
235 genus Nocardia 1.430503e-03 0.005013 0.003978
236 species Nocardia sp. 348MFTsu5.1 0.001989
237 species Unclassified Nocardia 1.430503e-03 0.005013 0.001989
238 genus Rhodococcus 5.542781e-03 0.003718 0.009832 0.003718 0.015143 0.001732
239 genus Unclassified Nocardiaceae 5.404688e-03 0.004832 0.002528 0.001989 0.006936
240 family Gordoniaceae 0.001266 0.001734
241 genus Gordonia 0.001266
242 genus Unclassified Gordoniaceae 0.001734
243 family Unclassified Corynebacteriales 7.373795e-03 0.037067 0.004916 0.037540 0.038750 0.001956 0.060641
244 order Micromonosporales 0.005511 0.004875 0.002013 0.001747
245 family Micromonosporaceae 0.005511 0.004875 0.001747
246 genus Actinoplanes 0.005511
247 genus Unclassified Micromonosporaceae 0.004875 0.001747
248 family Unclassified Micromonosporales 0.002013
249 order Propionibacteriales 6.529168e-02 0.019621 0.098659 0.013468 0.035533 0.046396
250 family Propionibacteriaceae 0.003718 0.003718
251 family Nocardioidaceae 6.081451e-02 0.015903 0.093620 0.004875 0.022078 0.028360
252 genus Kribbella 0.010443
253 genus Nocardioides 2.991964e-03 0.030365 0.003737 0.006231
254 genus Aeromicrobium 4.281100e-03 0.006106
255 genus Pimelobacter 6.014517e-03
256 genus Unclassified Nocardioidaceae 4.752693e-02 0.005460 0.063254 0.004875 0.012235 0.022129
257 family Unclassified Propionibacteriales 4.477170e-03 0.005039 0.004875 0.013456 0.018036
258 order Pseudonocardiales 0.001251 0.006988
259 family Pseudonocardiaceae 0.003515
260 family Unclassified Pseudonocardiales 0.001251 0.003473
261 order Streptomycetales 8.045000e-04 0.003264 0.008021 0.001199 0.009126 0.008766
262 family Streptomycetaceae 8.045000e-04 0.003515
263 family Unclassified Streptomycetales 0.003264 0.008021 0.001199 0.009126 0.005251
264 order Streptosporangiales 1.475347e-03 0.010971 0.001242 0.004069
265 family Streptosporangiaceae 1.475347e-03 0.010971 0.002062
266 genus Streptosporangium 1.475347e-03
267 genus Nonomuraea 0.010971
268 genus Unclassified Streptosporangiaceae 0.002062
269 family Unclassified Streptosporangiales 0.001242 0.002006
270 order Frankiales 2.667752e-03 0.020779 0.002401 0.001473 0.001726
271 family Frankiaceae 1.099098e-03 0.001199 0.001473
272 genus Frankia 1.099098e-03
273 genus Unclassified Frankiaceae 0.001199 0.001473
274 family Sporichthyaceae 7.717815e-04 0.001202
275 family Unclassified Frankiales 7.968718e-04 0.020779 0.001726
276 order Glycomycetales 0.002114
277 order Unclassified Actinobacteria 0.006772 1.038954e-01 0.277538 0.102465 0.212878 0.108926 0.048695 0.007868 0.430694 1.001437e-02
278 class Acidimicrobiia 0.004757
279 class Unclassified Actinobacteria 2.604300e-02 0.075611 0.089682 0.045683 0.072349 0.006440 0.174177 0.001559
280 phylum Planctomycetes 1.797613e-02 0.003246 0.003231 0.003246 0.009246 0.019820 2.022748e-02
281 class Planctomycetia 1.659110e-02 0.003231 0.004513 0.006585 1.835838e-02
282 order Planctomycetales 1.387223e-02 0.003231 0.003231 0.006585 1.835838e-02
283 family Planctomycetaceae 9.777573e-03 0.003231 0.003231 0.003264 1.760049e-03
284 genus Pirellula 1.351623e-03
285 genus Gimesia 0.002154 0.002154
286 genus Planctopirus 0.001631
287 genus Rhodopirellula 1.557367e-03
288 genus Schlesneria 1.373717e-03
289 genus Unclassified Planctomycetaceae 5.494867e-03 0.001077 0.001077 0.001633 1.760049e-03
290 family Isosphaeraceae 1.353178e-03
291 family Gemmataceae 9.142144e-03
292 genus Zavarzinella 1.828429e-03
293 genus Unclassified Gemmataceae 7.313715e-03
294 family Unclassified Planctomycetales 2.741483e-03 0.003321 7.456189e-03
295 order Unclassified Planctomycetia 2.718863e-03 0.001282
296 class Phycisphaerae 0.003246 0.003246
297 order Phycisphaerales 0.003246 0.003246
298 family Phycisphaeraceae 0.003246 0.003246
299 class Unclassified Planctomycetes 1.385036e-03 0.004733 0.013235 1.869094e-03
300 phylum Spirochaetes 9.356524e-04 0.01407 0.001247
301 class Spirochaetia 9.356524e-04
302 class Unclassified Spirochaetes 0.01407 0.001247
303 phylum Lentisphaerae 0.001248
304 class Lentisphaeria 0.001248
305 phylum Acidobacteria 5.506985e-03 0.005186 0.005001 6.802138e-03
306 genus Luteitalea 1.362580e-03
307 class Acidobacteriia 2.737843e-03 0.003340 6.802138e-03
308 order Acidobacteriales 2.737843e-03 0.001668 6.802138e-03
309 family Acidobacteriaceae 2.737843e-03 0.001668 3.359292e-03
310 genus Granulicella 2.737843e-03 1.679646e-03
311 species Granulicella mallensis 1.368922e-03
312 species Unclassified Granulicella 1.368922e-03 1.679646e-03
313 genus Unclassified Acidobacteriaceae 0.001668 1.679646e-03
314 family Unclassified Acidobacteriales 3.442846e-03
315 order Unclassified Acidobacteriia 0.001672
316 class Solibacteres 1.406562e-03 0.002593
317 order Solibacterales 1.406562e-03 0.002593
318 family Solibacteraceae 1.406562e-03 0.002593
319 genus Candidatus Solibacter 0.002593
320 genus Unclassified Solibacteraceae 1.406562e-03
321 class Unclassified Acidobacteria 8.673617e-19 0.002593 0.001661
322 phylum Armatimonadetes 0.001800
323 class Chthonomonadetes 0.001800
324 order Chthonomonadales 0.001800
325 phylum Verrucomicrobia 4.913573e-02 0.086876 0.029252 0.001890 0.105866 0.140446 1.172548e-01
326 class Spartobacteria 1.347237e-02 0.006906 0.012085 1.349496e-02
327 order Chthoniobacterales 1.088363e-02 0.005179 0.010359 1.349496e-02
328 family Chthoniobacteraceae 9.157807e-03 0.005179 0.010359 8.434353e-03
329 genus Chthoniobacter 3.451652e-03 0.006906 1.686871e-03
330 species Chthoniobacter flavus 2.588739e-03 0.001726
331 species Unclassified Chthoniobacter 8.629131e-04 0.005179 1.686871e-03
332 genus Unclassified Chthoniobacteraceae 5.706154e-03 0.005179 0.003453 6.747482e-03
333 family Unclassified Chthoniobacterales 1.725826e-03 5.060612e-03
334 order Unclassified Spartobacteria 2.588739e-03 0.001726 0.001726
335 class Verrucomicrobiae 1.266661e-02 0.016380 0.013852 0.015228 3.197117e-02
336 order Verrucomicrobiales 7.043486e-03 0.016380 0.013852 0.013536 3.023194e-02
337 family Verrucomicrobia subdivision 3 1.383408e-03 0.003383
338 genus Pedosphaera 1.383408e-03
339 genus Unclassified Verrucomicrobia subdivision 3 0.003383
340 family Rubritaleaceae 0.001706
341 family Verrucomicrobiaceae 5.660078e-03 0.010920 0.010389 0.005068 1.425094e-02
342 genus Verrucomicrobium 4.245059e-03 0.005460 0.001732 0.003379 3.562735e-03
343 genus Unclassified Verrucomicrobiaceae 1.415020e-03 0.005460 0.008658 0.001689 1.068821e-02
344 family Unclassified Verrucomicrobiales 8.673617e-19 0.005460 0.003463 0.003379 1.598100e-02
345 order Unclassified Verrucomicrobiae 5.623128e-03 0.001692 1.739236e-03
346 class Opitutae 8.190012e-03 0.009470 0.011837 0.024675 5.467826e-02
347 order Opitutales 5.447173e-03 0.004735 0.008454 0.016412 5.123037e-02
348 family Opitutaceae 5.447173e-03 0.004735 0.008454 0.013133 2.659404e-02
349 genus Opitutus 0.001647
350 genus Lacunisphaera 1.686871e-03
351 genus Unclassified Opitutaceae 5.447173e-03 0.004735 0.008454 0.011486 2.490717e-02
352 family Unclassified Opitutales 0.003280 2.463633e-02
353 order Puniceicoccales 1.383408e-03 3.447891e-03
354 family Puniceicoccaceae 1.383408e-03
355 genus Coraliomargarita 1.383408e-03
356 family Unclassified Puniceicoccales 3.447891e-03
357 order Unclassified Opitutae 1.359432e-03 0.004735 0.003383 0.008262
358 class Unclassified Verrucomicrobia 1.480673e-02 0.061026 0.029252 0.001890 0.073270 0.088458 1.711043e-02
359 phylum Bacteroidetes 3.295928e-01 0.074576 0.215748 0.081720 0.014033 0.001539 0.286794 0.002775 0.093535 0.001658 7.554530e-03
360 order Bacteroidetes Order II. Incertae sedis 9.195644e-04 0.001658 7.554530e-03
361 family Rhodothermaceae 9.195644e-04
362 family Unclassified Bacteroidetes Order II. Incertae sedis 0.001658 7.554530e-03
363 class Flavobacteriia 4.286517e-02 0.005149 0.005083 0.004875 0.012067 0.018719 0.001374 0.003463
364 order Flavobacteriales 4.194417e-02 0.005149 0.005083 0.004875 0.010094 0.017469 0.001374 0.001732
365 family Flavobacteriaceae 4.194417e-02 0.005149 0.005083 0.004875 0.010094 0.014974 0.001374 0.001732
366 genus Flavobacterium 3.734131e-02 0.005083 0.008085 0.014974 0.001374
367 species Flavobacterium sp. CF136 9.202837e-04 0.002497
368 species Unclassified Flavobacterium 3.642103e-02 0.005083 0.008085 0.012477 0.001374
369 genus Unclassified Flavobacteriaceae 4.602859e-03 0.005149 0.004875 0.002010 0.001732
370 family Unclassified Flavobacteriales 0.002495
371 order Unclassified Flavobacteriia 9.210041e-04 0.001972 0.001250 0.001732
372 class Sphingobacteriia 8.276808e-03 0.079827 0.004875 0.025033 0.012121
373 order Sphingobacteriales 8.276808e-03 0.079827 0.004875 0.022536 0.012121
374 family Sphingobacteriaceae 8.276808e-03 0.079827 0.004875 0.017528 0.006926
375 genus Mucilaginibacter 3.676103e-03 0.004875 0.005025 0.001732
376 species Mucilaginibacter gotjawali 0.001256
377 species Unclassified Mucilaginibacter 3.676103e-03 0.004875 0.003769 0.001732
378 genus Pedobacter 0.069178 0.004991
379 genus Unclassified Sphingobacteriaceae 4.600705e-03 0.010648 0.007512 0.005195
380 family Unclassified Sphingobacteriales 0.005008 0.005195
381 order Unclassified Sphingobacteriia 0.002497
382 class Chitinophagia 2.738956e-02 0.010299 0.016217 0.003463
383 order Chitinophagales 2.647571e-02 0.010299 0.013724 0.003463
384 family Chitinophagaceae 2.373487e-02 0.010299 0.013724 0.003463
385 genus Niastella 0.003463
386 genus Niabella 1.829122e-03
387 species Niabella ginsenosidivorans 9.145609e-04
388 species Unclassified Niabella 9.145609e-04
389 genus Segetibacter 2.741552e-03
390 genus Unclassified Chitinophagaceae 1.916419e-02 0.010299 0.013724
391 family Unclassified Chitinophagales 2.740845e-03
392 order Unclassified Chitinophagia 9.138506e-04 0.002493
393 class Cytophagia 1.608755e-01 0.033669 0.094623 0.018342 0.128106 0.015615
394 order Cytophagales 1.427069e-01 0.028519 0.084094 0.018342 0.121876 0.013878
395 family Hymenobacteraceae 0.025153 0.010100 0.006947
396 genus Hymenobacter 0.020135 0.010100 0.005210
397 genus Unclassified Hymenobacteraceae 0.005018 0.001737
398 family Cytophagaceae 1.372678e-01 0.078829 0.004875 0.103225 0.005195
399 genus Spirosoma 8.037615e-03 0.004875 0.003736 0.001732
400 species Spirosoma linguale 8.816652e-04
401 species Unclassified Spirosoma 7.155950e-03 0.004875 0.003736 0.001732
402 genus Dyadobacter 9.954801e-03 0.031588 0.024862
403 genus Unclassified Cytophagaceae 1.192753e-01 0.047242 0.074627 0.003463
404 family Unclassified Cytophagales 5.439182e-03 0.003367 0.005265 0.003367 0.018652 0.001737
405 order Unclassified Cytophagia 1.816859e-02 0.005149 0.010529 0.006230 0.001737
406 class Unclassified Bacteroidetes 8.926611e-02 0.035758 0.025917 0.053628 0.001966 0.001539 0.098719 0.001402 0.058873
407 phylum Unclassified Bacteria 3.370652e-01 0.006201 0.002931 0.001890 0.001940 0.536961 0.123944 0.737991 0.021904 0.258522 0.037273 0.004052 0.971961 0.118011 0.008087 6.938894e-18 2.350573e-02
408 superkingdom Archaea 0.004716 0.001739
409 phylum Euryarchaeota 0.004716
410 class Halobacteria 0.004716
411 order Halobacteriales 0.004716
412 family Haloarculaceae 0.004716
413 genus Halorientalis 0.004716
414 phylum Thaumarchaeota 0.001739
415 superkingdom Unclassified 4.440892e-16 0.019753 0.006942 0.006866
Functionefpkg Raw sequence count Amino acid identity %, average Description
NarG_NxrA 0.00677 1 88.00 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NasA 3.92239 513 79.63 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.76948 46 78.23 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.01433 1 83.70 nifB; nitrogen fixation protein NifB
NirA 2.10652 161 73.27 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 2.42968 252 79.39 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.93570 54 76.70 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirU 1.47956 105 81.30 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.00811 1 62.50 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
UreA 1.73486 58 85.34 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.04484 66 83.44 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.35050 251 88.88 ureC; urease subunit alpha [EC:3.5.1.5]
Function categoryefpkg Raw sequence count Amino acid identity %, average
Denitrification 0.00811 1 62.50
Nitrate assimilatory reduction 4.69187 559 79.51
Nitrate dissimilatory reduction 0.00677 1 88.00
Nitrite assimilation 7.95146 572 77.77
Nitrogen fixation 0.01433 1 83.70
Urease 7.13020 375 87.37
NasA NirB NasB NarG_NxrA UreC NirA UreB NirD UreA NifB NirU NosZ
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 3.922386 2.429676 0.769480 0.006769 3.350501 2.106520 2.044840 1.935699 1.734863 0.014332 1.479564 0.008106
2 norank Unknown 0.067001
3 superkingdom Bacteria 3.922386 2.429676 0.769480 0.006769 3.283501 2.106520 1.817953 1.935699 1.734863 0.014332 1.479564 0.008106
4 phylum Cyanobacteria 0.013302 0.285146
5 order Synechococcales 0.028565
6 class Unclassified Cyanobacteria 0.013302 0.256581
7 phylum Proteobacteria 1.918405 1.241634 0.739297 1.599814 1.511227 1.013138 1.126633 0.865018 0.014332 1.370277 0.008106
8 class Gammaproteobacteria 0.148712 0.027386 0.012941 0.035802 0.008478 0.037582
9 order Chromatiales 0.035802
10 family Ectothiorhodospiraceae 0.035802
11 order Methylococcales 0.018117
12 family Methylococcaceae 0.006039
13 genus Methylomicrobium 0.006039
14 family Unclassified Methylococcales 0.012078
15 order Nevskiales 0.037582
16 family Sinobacteraceae 0.037582
17 genus Hydrocarboniphaga 0.037582
18 order Pseudomonadales 0.056777 0.009439 0.012941
19 family Pseudomonadaceae 0.050473 0.009439 0.012941
20 genus Pseudomonas 0.006334 0.009439
21 genus Unclassified Pseudomonadaceae 0.044139 0.012941
22 family Unclassified Pseudomonadales 0.006303
23 order Enterobacterales 0.018883
24 family Pectobacteriaceae 0.012184
25 family Enterobacteriaceae 0.006699
26 order Unclassified Gammaproteobacteria 0.054936 0.017946 0.008478
27 class Alphaproteobacteria 1.043189 0.715913 0.687384 0.879940 0.709514 0.437587 0.810230 0.550641 1.187004
28 order Rhodospirillales 0.027132 0.026564
29 family Rhodospirillaceae 0.018088
30 genus Nitrospirillum 0.009044
31 genus Unclassified Rhodospirillaceae 0.009044
32 family Acetobacteraceae 0.026564
33 genus Roseomonas 0.026564
34 family Unclassified Rhodospirillales 0.009044
35 order Sphingomonadales 0.382567 0.279143 0.026780 0.037273 0.656490
36 family Sphingomonadaceae 0.373234 0.211677 0.026780 0.037273 0.656490
37 genus Sphingomonas 0.121833 0.028839 0.165584
38 species Sphingomonas taxi 0.009660 0.082886
39 species Unclassified Sphingomonas 0.121833 0.019179 0.082698
40 genus Sphingobium 0.009609 0.123764
41 species Sphingobium sp. SYK-6 0.082509
42 species Unclassified Sphingobium 0.009609 0.041255
43 genus Novosphingobium 0.012349
44 genus Unclassified Sphingomonadaceae 0.239051 0.173228 0.026780 0.037273 0.367143
45 family Unclassified Sphingomonadales 0.009332 0.067466
46 order Rhizobiales 0.464246 0.118192 0.563430 0.572467 0.591688 0.315751 0.071042 0.315751 1.172874
47 family Methylobacteriaceae 0.378513 0.362690 0.438704 0.332099 0.286853 0.286853 0.465077
48 genus Methylobacterium 0.261467 0.362690 0.265840 0.306653 0.260086 0.260086 0.422923
49 species Methylobacterium sp. GXF4 0.018034 0.013282 0.063795
50 species Methylobacterium sp. 77 0.009062
51 species Unclassified Methylobacterium 0.234371 0.362690 0.252558 0.242858 0.260086 0.260086 0.422923
52 genus Unclassified Methylobacteriaceae 0.117046 0.172864 0.025446 0.026766 0.026766 0.042154
53 family Methylocystaceae 0.014286
54 family Xanthobacteraceae 0.014309
55 family Bradyrhizobiaceae 0.009117 0.017548 0.012997 0.056304
56 family Beijerinckiaceae 0.022234 0.098493 0.042837
57 genus Methyloferula 0.014264
58 genus Methylocella 0.078794
59 genus Unclassified Beijerinckiaceae 0.022234 0.019699 0.028573
60 family Unclassified Rhizobiales 0.054382 0.019699 0.183191 0.133763 0.246592 0.028898 0.071042 0.028898 0.580060
61 order Unclassified Alphaproteobacteria 0.169244 0.318578 0.123955 0.280693 0.091261 0.084563 0.082698 0.234890 0.014131
62 class Betaproteobacteria 0.112900 0.116648 0.034827 0.079929 0.041255 0.122466 0.014332
63 order Burkholderiales 0.074890 0.097551 0.034827 0.053363 0.041255 0.122466 0.014332
64 family Burkholderiaceae 0.042094
65 family Oxalobacteraceae 0.041255
66 family Comamonadaceae 0.087669 0.026682
67 genus Acidovorax 0.013341
68 genus Rhodoferax 0.009559
69 genus Unclassified Comamonadaceae 0.078111 0.013341
70 family Unclassified Burkholderiales 0.032796 0.009882 0.034827 0.026682 0.122466 0.014332
71 order Unclassified Betaproteobacteria 0.038010 0.019097 0.026566
72 class Deltaproteobacteria 0.011103 0.051033 0.051033
73 order Myxococcales 0.011103 0.051033 0.051033
74 family Polyangiaceae 0.011103
75 family Unclassified Myxococcales 0.051033 0.051033
76 class Unclassified Proteobacteria 0.602501 0.381687 0.017085 0.627004 0.801712 0.447461 0.185460 0.225762 0.183273 0.008106
77 phylum Firmicutes 0.013360 0.035802
78 class Bacilli 0.013360
79 order Bacillales 0.013360
80 class Unclassified Firmicutes 0.035802
81 phylum Deinococcus-Thermus 0.039119
82 class Deinococci 0.039119
83 order Deinococcales 0.039119
84 family Deinococcaceae 0.039119
85 phylum Actinobacteria 0.477918 0.170703 0.006769 0.081122 0.151259 0.112745
86 class Actinobacteria 0.414594 0.095065 0.006769 0.081122 0.114665 0.112745
87 order Kineosporiales 0.040803
88 family Kineosporiaceae 0.027202
89 genus Kineococcus 0.027202
90 species Kineococcus radiotolerans 0.027202
91 family Unclassified Kineosporiales 0.013601
92 order Micrococcales 0.042346 0.019424 0.078579
93 family Micrococcaceae 0.019424
94 genus Arthrobacter 0.009712
95 genus Unclassified Micrococcaceae 0.009712
96 family Intrasporangiaceae 0.021598
97 family Microbacteriaceae 0.039460
98 genus Agromyces 0.039460
99 family Unclassified Micrococcales 0.020748 0.039119
100 order Corynebacteriales 0.024392
101 family Gordoniaceae 0.012159
102 genus Gordonia 0.012159
103 family Unclassified Corynebacteriales 0.012233
104 order Propionibacteriales 0.009630
105 family Propionibacteriaceae 0.009630
106 order Pseudonocardiales 0.036086 0.075163
107 family Pseudonocardiaceae 0.075163
108 family Unclassified Pseudonocardiales 0.036086
109 order Streptomycetales 0.024448
110 family Streptomycetaceae 0.024448
111 genus Streptomyces 0.018319
112 genus Unclassified Streptomycetaceae 0.006129
113 order Streptosporangiales 0.005995
114 family Streptosporangiaceae 0.005995
115 genus Streptosporangium 0.005995
116 order Unclassified Actinobacteria 0.307782 0.075640 0.006769 0.040319 0.037582
117 class Unclassified Actinobacteria 0.063323 0.075638 0.036594
118 phylum Planctomycetes 0.008292 0.008292
119 phylum Acidobacteria 0.031981 0.051325 0.039271
120 class Acidobacteriia 0.031981 0.038494 0.013090
121 order Acidobacteriales 0.031981 0.038494 0.013090
122 family Acidobacteriaceae 0.031981 0.038494
123 genus Terriglobus 0.021445 0.012831
124 genus Unclassified Acidobacteriaceae 0.010536 0.025662
125 family Unclassified Acidobacteriales 0.013090
126 class Unclassified Acidobacteria 0.012831 0.026181
127 phylum Bacteroidetes 0.402475 0.298178 0.173667 0.284360 0.241682 0.284360
128 class Sphingobacteriia 0.014168 0.019321 0.040883
129 order Sphingobacteriales 0.007092 0.019321 0.040883
130 family Sphingobacteriaceae 0.007092 0.019321 0.040883
131 order Unclassified Sphingobacteriia 0.007076
132 class Chitinophagia 0.006924 0.019219
133 order Chitinophagales 0.006924 0.009579
134 family Chitinophagaceae 0.006924 0.009579
135 order Unclassified Chitinophagia 0.009640
136 class Cytophagia 0.048979 0.009630 0.160247 0.284360 0.079963 0.284360
137 order Cytophagales 0.034805 0.160247 0.284360 0.079963 0.284360
138 family Hymenobacteraceae 0.007076 0.106884 0.232658 0.079963 0.232658
139 genus Rufibacter 0.079963
140 genus Hymenobacter 0.013360 0.103403 0.103403
141 genus Unclassified Hymenobacteraceae 0.007076 0.093523 0.129254 0.129254
142 family Cytophagaceae 0.013579
143 family Unclassified Cytophagales 0.014151 0.053363 0.051702 0.051702
144 order Unclassified Cytophagia 0.014173 0.009630
145 class Unclassified Bacteroidetes 0.332404 0.250008 0.013420 0.120836
146 phylum Unclassified Bacteria 1.091607 0.710869 0.030184 1.402236 0.258822 0.520455 0.332912 0.472740 0.070016
147 superkingdom Unclassified 0.226887
Functionefpkg Raw sequence count Amino acid identity %, average Description
AmoA_PmoA 0.01134 1 100.00 amoA-pmoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39]
AmoC_PmoC 0.01213 1 100.00 amoC-pmoC; methane/ammonia monooxygenase subunit C
NapA 0.07675 17 96.68 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.06287 4 87.95 Periplasmic nitrate reductase cytochrome c550-type subunit
NapD 0.04466 2 92.90 Periplasmic nitrate reductase component NapD
NapF 0.01665 1 96.90 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NarG_NxrA 0.20971 67 91.35 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.29308 46 90.98 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.10887 9 86.94 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.38402 30 78.77 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.34858 656 79.74 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.48116 75 80.43 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00681 1 95.90 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.01417 2 96.00 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.01084 1 100.00 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.01372 2 96.50 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.40686 67 77.04 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 3.71978 846 79.17 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.95815 146 76.97 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.21383 30 74.31 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirN 0.00683 1 87.80 Nitrite reductase associated c-type cytochorome NirN
NirS 0.00542 1 62.50 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirU 0.34582 52 81.90 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.05011 9 86.52 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.01430 2 79.60 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
UreA 2.39241 161 80.87 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 3.35045 212 79.74 ureB; urease subunit beta [EC:3.5.1.5]
UreC 4.54774 723 87.63 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.01271 1 50.00 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.19378 40 83.28 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.01430 2 79.60
Ammonium oxidation 0.02347 2 100.00
Denitrification 0.48269 82 79.75
Nitrate assimilatory reduction 2.82974 731 79.81
Nitrate dissimilatory reduction 1.19661 176 89.37
Nitrite assimilation 6.43060 1111 78.88
Nitrogen fixation 0.04554 6 96.82
Urease 10.29060 1096 85.11
NapD NarJ NasA AmoC_PmoC NifH_AnfH_VnfH NarH_NxrB NapA NifK_AnfK_VnfK NirN AmoA_PmoA NirS NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapB NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.044657 3.840235e-01 2.348580 0.012127 0.010841 0.293079 0.076750 0.013720 0.006832 0.01134 0.005419 0.014172 3.350451 0.016653 1.958146e+00 2.392406 0.213832 0.012715 0.050113 3.719777 0.481162 0.209711 0.193777 4.547742 0.406856 0.062871 0.014299 0.108868 0.00681 0.345823
2 norank Unknown 0.157525
3 superkingdom Bacteria 0.044657 3.840235e-01 2.348580 0.012127 0.010841 0.293079 0.076750 0.013720 0.006832 0.01134 0.005419 0.014172 3.331109 0.016653 1.958146e+00 2.373917 0.213832 0.012715 0.050113 3.719777 0.481162 0.209711 0.193777 4.358659 0.406856 0.062871 0.014299 0.108868 0.00681 0.345823
4 phylum Cyanobacteria 0.005041 0.004520 0.004855 0.006298 0.033417
5 order Oscillatoriales 0.005041
6 family Microcoleaceae 0.005041
7 genus Arthrospira 0.005041
8 order Synechococcales 0.004520
9 family Merismopediaceae 0.004520
10 genus Synechocystis 0.004520
11 class Unclassified Cyanobacteria 0.004855 0.006298 0.033417
12 phylum Proteobacteria 0.044657 1.871394e-01 1.226711 0.012127 0.010841 0.087803 0.076750 0.006899 0.006832 0.01134 0.005419 0.014172 1.403341 0.016653 9.552716e-01 1.054255 0.146314 0.011514 1.500644 0.426081 0.062074 0.120459 1.743623 0.259750 0.049960 0.059575 0.00681 0.298391
13 class Gammaproteobacteria 0.044657 1.623395e-01 0.119561 0.012127 0.067002 0.018157 0.007122 0.478980 0.016653 1.277340e-01 0.226992 0.005556 0.157555 0.028366 0.037338 0.029201 0.460562 0.033674
14 order Xanthomonadales 0.024358
15 family Rhodanobacteraceae 0.024358
16 genus Rhodanobacter 0.019486
17 genus Unclassified Rhodanobacteraceae 0.004872
18 order Methylococcales 0.012127 0.007122
19 family Methylococcaceae 0.012127 0.007122
20 genus Methylomonas 0.012127 0.007122
21 order Immundisolibacterales 0.041766
22 family Immundisolibacteraceae 0.041766
23 genus Immundisolibacter 0.041766
24 order Pseudomonadales 0.036287 0.394815 0.205576 0.035616 0.316212
25 family Pseudomonadaceae 0.033367 0.394815 0.205576 0.031183 0.316212
26 genus Pseudomonas 0.010046 0.381983 0.149912 0.022329 0.233877
27 genus Unclassified Pseudomonadaceae 0.023320 0.012832 0.055664 0.008853 0.082335
28 family Unclassified Pseudomonadales 0.002921 0.004434
29 order Enterobacterales 0.044657 1.498519e-01 0.041781 0.032516 0.018157 0.016653 8.448533e-02 0.080634 0.022759 0.021777 0.013072
30 family Erwiniaceae 0.044657 7.492594e-02 0.017422 0.009079 0.016653 7.881005e-02 0.052771 0.017084 0.009327 0.013072
31 genus Pantoea 0.044657 0.013066 0.004539 0.016653 4.982417e-02 0.013126 0.008673 0.013072
32 species Pantoea sp. GM01 4.115085e-02
33 species Unclassified Pantoea 0.044657 0.013066 0.004539 0.016653 8.673322e-03 0.013126 0.008673 0.013072
34 genus Erwinia 6.243828e-02 2.057542e-02 0.031234 0.009327
35 species Erwinia billingiae 2.497531e-02 2.057542e-02 0.022310 0.003109
36 species Unclassified Erwinia 3.746297e-02 0.008924 0.006218
37 genus Unclassified Erwiniaceae 1.248766e-02 0.004355 0.004539 8.410460e-03 0.008410 0.008410
38 family Pectobacteriaceae 0.002787
39 family Yersiniaceae 3.746297e-02 0.004262 0.004438
40 genus Rahnella 1.248766e-02 0.004438
41 genus Serratia 0.004262
42 genus Unclassified Yersiniaceae 2.497531e-02
43 family Enterobacteriaceae 0.004311 0.004976
44 genus Kosakonia 0.004311
45 genus Unclassified Enterobacteriaceae 0.004976
46 family Unclassified Enterobacterales 3.746297e-02 0.013000 0.027541 0.009079 5.675277e-03 0.023424 0.005675 0.012450
47 order Unclassified Gammaproteobacteria 1.248766e-02 0.041493 0.034486 0.042399 4.324871e-02 0.021416 0.005556 0.041305 0.005607 0.015561 0.004843 0.144350 0.020603
48 class Alphaproteobacteria 2.479991e-02 0.373144 0.020801 0.040503 0.006899 0.007050 0.301804 1.798083e-01 0.390451 0.044625 0.011514 0.334692 0.174630 0.003104 0.004805 0.287743 0.180803 0.049960 0.00681 0.258786
49 order Rhodospirillales 0.005398 2.037548e-02 0.005398 0.013191
50 family Rhodospirillaceae 2.037548e-02
51 genus Nitrospirillum 2.037548e-02
52 family Unclassified Rhodospirillales 0.005398 0.005398 0.013191
53 order Sphingomonadales 0.129437 0.020575 9.947171e-02 0.183797 0.004805
54 family Erythrobacteraceae 1.952180e-02 0.004539
55 family Sphingomonadaceae 0.116370 0.020575 7.994991e-02 0.116790 0.004805
56 genus Sphingomonas 0.017522 2.008274e-02 0.008962
57 species Sphingomonas panacis 2.008274e-02
58 species Unclassified Sphingomonas 0.017522 0.008962
59 genus Sphingobium 0.020575
60 genus Novosphingobium 0.004500
61 genus Unclassified Sphingomonadaceae 0.098848 5.986717e-02 0.103327 0.004805
62 family Unclassified Sphingomonadales 0.013067 1.387779e-17 0.062468
63 order Rhizobiales 1.263820e-02 0.172158 0.013856 0.035979 0.199809 0.213812 0.044625 0.011514 0.032269 0.158032 0.213298 0.168507 0.049960 0.00681 0.245595
64 family Methylobacteriaceae 0.096919 0.165670 0.187086 0.074429 0.106367 0.108208 0.119206
65 genus Microvirga 0.021416
66 genus Methylobacterium 0.075779 0.151776 0.151776 0.057749 0.093864 0.102224 0.112662
67 species Methylobacterium sp. GXF4 0.008439 0.012503 0.012002
68 species Unclassified Methylobacterium 0.067339 0.151776 0.151776 0.057749 0.081362 0.090223 0.112662
69 genus Unclassified Methylobacteriaceae 0.021141 0.013894 0.013894 0.016680 0.012503 0.005984 0.006544
70 family Methylocystaceae 0.005562
71 genus Methylocystis 0.005562
72 family Bradyrhizobiaceae 1.263820e-02 0.025284 0.035979 0.037355 0.033494 0.012559 0.036095 0.049960 0.033345
73 genus Bradyrhizobium 1.263820e-02 0.017982 0.027321 0.033494 0.006270 0.024065 0.033307 0.019954
74 species Bradyrhizobium icense 0.016747
75 species Unclassified Bradyrhizobium 1.263820e-02 0.017982 0.027321 0.016747 0.006270 0.024065 0.033307 0.019954
76 genus Bosea 0.004207
77 genus Unclassified Bradyrhizobiaceae 0.021077 0.017997 0.010035 0.006289 0.012030 0.016653 0.013391
78 family Hyphomicrobiaceae 0.006308
79 genus Rhodoplanes 0.006308
80 species Rhodoplanes sp. Z2-YC6860 0.006308
81 family Beijerinckiaceae 0.018950 0.007270 0.023071
82 genus Methyloferula 0.008516
83 genus Methylocella 0.005217 0.004614
84 genus Unclassified Beijerinckiaceae 0.005217 0.007270 0.018457
85 family Rhizobiaceae 0.021307
86 family Unclassified Rhizobiales 0.025442 0.013856 0.012832 0.026726 0.011514 0.009198 0.050109 0.088064 0.024204 0.00681 0.093043
87 order Unclassified Alphaproteobacteria 1.216171e-02 0.071550 0.006945 0.004525 0.006899 0.007050 0.076021 5.996107e-02 0.176638 0.118625 0.016598 0.003104 0.069047 0.012296
88 class Betaproteobacteria 0.308317 0.006832 0.01134 0.127213 4.467641e-01 0.149912 0.016088 0.479567 0.182561 0.009189 0.019502 0.352757 0.025901
89 order Nitrosomonadales 0.004178 0.01134 4.075096e-02 0.009003 0.004645
90 family Nitrosomonadaceae 0.01134 0.009003
91 genus Nitrosospira 0.01134
92 genus Unclassified Nitrosomonadaceae 0.009003
93 family Methylophilaceae 0.004178 4.075096e-02 0.004645
94 genus Methylotenera 0.004178 4.075096e-02
95 genus Unclassified Methylophilaceae 0.004645
96 order Burkholderiales 0.244963 0.006832 0.106536 3.663173e-01 0.042832 0.007086 0.274076 0.174335 0.006123 0.014703 0.270933 0.025901
97 family Burkholderiaceae 0.039087 0.021307 7.679990e-02 0.042832 0.022159 0.063259 0.025901
98 genus Cupriavidus 5.671716e-02
99 genus Paraburkholderia 0.025901
100 genus Burkholderia 0.013964
101 genus Unclassified Burkholderiaceae 0.025123 0.021307 2.008274e-02 0.042832 0.022159 0.063259
102 family Oxalobacteraceae 0.071553 0.008854 0.050185 0.069700
103 genus Massilia 0.004250 0.008389 0.019009
104 genus Herbaspirillum 0.004157
105 genus Unclassified Oxalobacteraceae 0.063147 0.008854 0.041796 0.050691
106 family Comamonadaceae 0.012260 0.006832 2.008274e-02 0.022677 0.031068
107 genus Acidovorax 0.006279
108 genus Variovorax 2.008274e-02
109 genus Unclassified Comamonadaceae 0.012260 0.006832 0.022677 0.024788
110 family Unclassified Burkholderiales 0.122063 0.085229 2.694346e-01 0.007086 0.220386 0.124151 0.006123 0.014703 0.106907
111 order Unclassified Betaproteobacteria 0.059176 0.020677 3.969584e-02 0.107080 0.200846 0.008226 0.003066 0.004799 0.081824
112 class Deltaproteobacteria 0.059538 3.930862e-03 0.059538 0.008540 0.007245 0.062889
113 order Myxococcales 0.011786 0.011786 0.044022
114 family Anaeromyxobacteraceae 0.006289
115 genus Anaeromyxobacter 0.006289
116 family Unclassified Myxococcales 0.011786 0.011786 0.037733
117 order Desulfuromonadales 3.930862e-03 0.003931
118 order Unclassified Deltaproteobacteria 0.047753 0.047753 0.004609 0.007245 0.018867
119 class Epsilonproteobacteria 0.004877
120 class Unclassified Proteobacteria 0.420810 0.010841 0.018089 0.005419 0.435805 1.970344e-01 0.227361 0.080044 0.520290 0.033279 0.012443 0.066951 0.579672 0.078947 0.039605
121 phylum Firmicutes 0.058025 0.043901
122 class Bacilli 0.038683 0.031398
123 order Bacillales 0.012578
124 order Unclassified Bacilli 0.038683 0.018820
125 class Unclassified Firmicutes 0.019342 0.012503
126 phylum Deinococcus-Thermus 0.005178 0.097853 0.018588
127 class Deinococci 0.005178 0.057822
128 order Deinococcales 0.005178
129 family Deinococcaceae 0.005178
130 order Unclassified Deinococci 0.057822
131 class Unclassified Deinococcus-Thermus 0.040031 0.018588
132 phylum Chloroflexi 0.006261
133 phylum Actinobacteria 1.968841e-01 0.305179 0.189021 0.102352 3.381041e-01 0.182480 0.552483 0.020095 0.141437 0.024002 0.313801 0.049293
134 class Actinobacteria 1.968841e-01 0.261872 0.146584 0.082554 2.618748e-01 0.147869 0.412433 0.020095 0.116219 0.019137 0.220342 0.049293
135 order Geodermatophilales 0.012853
136 family Geodermatophilaceae 0.012853
137 order Nakamurellales 2.520044e-02 0.013516 0.008924 0.012654
138 family Nakamurellaceae 0.013516 0.004462 0.006327
139 genus Nakamurella 0.009010 0.004462
140 genus Unclassified Nakamurellaceae 0.004505 0.006327
141 family Unclassified Nakamurellales 2.520044e-02 0.004462 0.006327
142 order Kineosporiales 0.005870 2.077933e-02 0.008684
143 family Kineosporiaceae 0.005870 0.004342
144 genus Kineococcus 0.002935 0.004342
145 genus Unclassified Kineosporiaceae 0.002935
146 family Unclassified Kineosporiales 2.077933e-02 0.004342
147 order Micrococcales 2.490116e-02 0.005035 4.049591e-02 0.079230 0.006276 0.044115
148 family Micrococcaceae 0.022223 0.003144 0.006106
149 genus Arthrobacter 0.006106
150 genus Unclassified Micrococcaceae 0.022223 0.003144
151 family Dermacoccaceae 0.005035 0.006327
152 family Cellulomonadaceae 1.961310e-02 0.008934
153 genus Cellulomonas 0.008934
154 genus Unclassified Cellulomonadaceae 1.961310e-02
155 family Intrasporangiaceae 2.490116e-02 0.003132
156 genus Janibacter 1.245058e-02
157 genus Unclassified Intrasporangiaceae 1.245058e-02 0.003132
158 family Microbacteriaceae 0.012738 0.012692
159 genus Microbacterium 0.004276 0.012692
160 genus Unclassified Microbacteriaceae 0.008462
161 family Unclassified Micrococcales 2.088281e-02 0.035335 0.018990
162 order Corynebacteriales 1.299055e-02 0.036645 0.046188 1.925292e-02 0.017921 0.022087 0.006308 0.012162
163 family Mycobacteriaceae 0.014856 1.925292e-02 0.013520 0.003100
164 genus Mycobacterium 0.014856 0.009128
165 genus Unclassified Mycobacteriaceae 1.925292e-02 0.004392 0.003100
166 family Nocardiaceae 1.299055e-02 0.016093 0.006414 0.006308
167 genus Nocardia 0.010402
168 species Nocardia sp. 348MFTsu5.1 0.005166
169 species Unclassified Nocardia 0.005237
170 genus Rhodococcus 0.002845 0.006308
171 genus Unclassified Nocardiaceae 1.299055e-02 0.002845 0.006414
172 family Unclassified Corynebacteriales 0.005696 0.039774 0.004401 0.018987 0.012162
173 order Micromonosporales 0.004554
174 order Propionibacteriales 0.040590 5.894897e-02 0.027425 0.017692 0.013275
175 family Propionibacteriaceae 0.036080 2.130724e-02 0.004544
176 genus Microlunatus 0.013530 0.004544
177 genus Unclassified Propionibacteriaceae 0.022550 2.130724e-02
178 family Nocardioidaceae 3.764174e-02 0.013148 0.013275
179 genus Nocardioides 3.764174e-02
180 genus Unclassified Nocardioidaceae 0.013148 0.013275
181 family Unclassified Propionibacteriales 0.004510 0.027425
182 order Pseudonocardiales 0.005269 1.970527e-02 0.008826
183 family Pseudonocardiaceae 0.005269 0.008826
184 genus Pseudonocardia 0.004448
185 genus Actinomycetospora 0.005269
186 genus Unclassified Pseudonocardiaceae 0.004378
187 family Unclassified Pseudonocardiales 1.970527e-02
188 order Streptomycetales 0.019289 0.006375
189 family Streptomycetaceae 0.016409 0.006375
190 genus Streptomyces 0.002819
191 genus Unclassified Streptomycetaceae 0.013590 0.006375
192 family Unclassified Streptomycetales 0.002881
193 order Unclassified Actinobacteria 1.337919e-01 0.127840 0.100396 0.077519 1.026924e-01 0.120443 0.266601 0.006821 0.087856 0.019137 0.150891 0.037131
194 class Unclassified Actinobacteria 0.043307 0.042437 0.019798 7.622923e-02 0.034611 0.140051 0.025218 0.004866 0.093459
195 phylum Planctomycetes 0.010056 0.202635 5.004599e-02 0.202635 0.100692 0.021925
196 class Planctomycetia 0.010056 3.468913e-02 0.050296 0.021925
197 order Planctomycetales 0.010056 1.938179e-02 0.019382 0.014591
198 family Planctomycetaceae 1.550543e-02 0.015505
199 genus Gimesia 1.550543e-02 0.015505
200 family Gemmataceae 0.014591
201 genus Zavarzinella 0.014591
202 family Unclassified Planctomycetales 0.010056 3.876358e-03 0.003876
203 order Unclassified Planctomycetia 1.530734e-02 0.030914 0.007334
204 class Phycisphaerae 0.011920 0.011920
205 class Unclassified Planctomycetes 0.190716 1.535686e-02 0.190716 0.050397
206 phylum Spirochaetes 0.012715 0.004481
207 phylum Lentisphaerae 0.013501
208 phylum Acidobacteria 0.025106 0.009789 0.012045
209 class Acidobacteriia 0.020028 0.009789 0.012045
210 order Acidobacteriales 0.020028 0.009789 0.012045
211 family Acidobacteriaceae 0.020028 0.012045
212 genus Terriglobus 0.005029
213 genus Granulicella 0.004940 0.006009
214 genus Unclassified Acidobacteriaceae 0.010059 0.006035
215 family Unclassified Acidobacteriales 0.009789
216 class Solibacteres 0.005078
217 order Solibacterales 0.005078
218 family Solibacteraceae 0.005078
219 genus Candidatus Solibacter 0.005078
220 phylum Verrucomicrobia 0.021093 0.008561 0.006124
221 class Spartobacteria 0.021093
222 class Unclassified Verrucomicrobia 0.008561 0.006124
223 phylum Bacteroidetes 0.362866 0.310673 3.159592e-01 0.310673 0.007208 0.038599 0.360645 0.004993 0.150933 0.005676 0.012911
224 class Flavobacteriia 0.011645 0.007208 0.013482 0.004993 0.006270 0.012911
225 order Flavobacteriales 0.011645 0.007208 0.013482 0.004993 0.006270 0.012911
226 family Flavobacteriaceae 0.011645 0.007208 0.008991 0.006270 0.012911
227 genus Wenyingzhuangia 0.012911
228 genus Flavobacterium 0.008337 0.008991
229 genus Unclassified Flavobacteriaceae 0.003308 0.007208 0.006270
230 family Unclassified Flavobacteriales 0.004491 0.004993
231 class Sphingobacteriia 0.019828 9.993512e-02 0.013555 0.006270
232 order Sphingobacteriales 0.019828 9.993512e-02 0.009054 0.006270
233 family Sphingobacteriaceae 0.016525 7.994809e-02 0.009054
234 genus Mucilaginibacter 0.004530
235 genus Unclassified Sphingobacteriaceae 0.016525 7.994809e-02 0.004525
236 family Unclassified Sphingobacteriales 0.003302 1.998702e-02 0.006270
237 order Unclassified Sphingobacteriia 0.004500
238 class Chitinophagia 0.019549
239 order Chitinophagales 0.016265
240 family Chitinophagaceae 0.013034
241 genus Niastella 0.003231
242 genus Unclassified Chitinophagaceae 0.009802
243 family Unclassified Chitinophagales 0.003231
244 order Unclassified Chitinophagia 0.003284
245 class Bacteroidia 0.012635
246 class Cytophagia 0.045206 0.297881 3.941053e-02 0.297881 0.040475 0.106892
247 order Cytophagales 0.038739 0.210410 3.941053e-02 0.210410 0.040475 0.088025
248 family Hymenobacteraceae 0.003302 0.173279 0.173279 0.004510 0.044022
249 genus Rufibacter 0.003302
250 genus Hymenobacter 0.012377 0.012377 0.025155
251 genus Unclassified Hymenobacteraceae 0.160902 0.160902 0.004510 0.018867
252 family Cytophagaceae 0.025537 3.941053e-02 0.026978
253 genus Spirosoma 0.012671 0.004496
254 genus Unclassified Cytophagaceae 0.012866 3.941053e-02 0.022483
255 family Unclassified Cytophagales 0.009900 0.037131 0.037131 0.008986 0.044003
256 order Unclassified Cytophagia 0.006468 0.087470 0.087470 0.018867
257 class Unclassified Bacteroidetes 0.266638 0.012792 1.766135e-01 0.012792 0.038599 0.293134 0.018867 0.005676
258 phylum Unclassified Bacteria 5.551115e-17 0.408443 0.016255 0.006821 1.232990 2.987648e-01 0.623874 0.051749 1.084958 0.013062 0.006200 0.029679 2.093841 0.071257 0.014299 0.047432
259 superkingdom Archaea 0.012635
260 phylum Euryarchaeota 0.012635
261 superkingdom Unclassified 0.019342 0.018489 0.018923
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.02650 21 91.95 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapB 0.04354 10 77.40 Periplasmic nitrate reductase cytochrome c550-type subunit
NapC 0.03745 10 87.28 Cytochrome c-type protein NapC
NapD 0.00977 2 73.00 Periplasmic nitrate reductase component NapD
NapE 0.02904 4 79.90 Periplasmic nitrate reductase component NapE
NapH 0.00296 1 96.00 Polyferredoxin NapH (periplasmic nitrate reductase)
NarG_NxrA 0.07409 85 93.13 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.07343 39 91.73 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.03459 10 78.16 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.04839 14 83.86 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 1.27439 1349 80.61 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.04969 29 74.53 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifD_AnfD_VnfD 0.00596 3 91.33 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NirA 0.27616 165 72.44 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 1.36711 1105 84.14 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.02551 250 78.26 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.01378 8 63.12 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirS 0.00594 4 53.02 nirS; Cytochrome cd1 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
NirU 0.16492 94 78.64 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.00256 2 94.00 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfH 0.00428 1 79.60 nrfH; cytochrome c nitrite reductase small subunit
UreA 1.38375 307 86.22 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 1.63747 375 81.25 ureB; urease subunit beta [EC:3.5.1.5]
UreC 2.37482 1368 88.73 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.01029 3 52.40 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.00535 4 75.97 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00428 1 79.60
Denitrification 0.03792 21 65.06
Nitrate assimilatory reduction 1.32407 1378 80.48
Nitrate dissimilatory reduction 0.37976 196 89.74
Nitrite assimilation 2.83370 1614 81.71
Nitrogen fixation 0.00596 3 91.33
Urease 5.39603 2050 86.99
NapD NapC NarJ NasA NapH NapA NarH_NxrB NirS NrfH NifD_AnfD_VnfD UreB NirD UreA NirK cNor-C NosZ NirB NarG_NxrA NasB cNorB_qNor UreC NirA NapE NapB NarI NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.009767 0.037449 0.048391 1.274385 0.002958 0.026499 0.073434 0.005943 0.004283 0.005961 1.637465 1.025511 1.383751e+00 0.013776 0.010287 0.002564 1.367106 0.074091 0.049689 0.005346 2.374817 0.276161 0.029044 0.043541 0.034587 0.164922
2 norank Unknown 0.003670 0.015557 4.914243e-03 0.029936
3 superkingdom Bacteria 0.009767 0.037449 0.048391 1.270715 0.002958 0.026499 0.073434 0.005943 0.004283 0.005961 1.612534 1.025511 1.378837e+00 0.013776 0.010287 0.002564 1.367106 0.074091 0.049689 0.005346 2.330706 0.276161 0.029044 0.043541 0.034587 0.164922
4 phylum Cyanobacteria 0.022794 4.914243e-03 0.002063
5 order Oscillatoriales 0.013309 4.914243e-03
6 family Cyanothecaceae 0.013309 4.914243e-03
7 genus Cyanothece 0.013309 4.914243e-03
8 class Unclassified Cyanobacteria 0.009485 0.002063
9 phylum Proteobacteria 0.009767 0.037449 0.048391 0.825678 0.002958 0.025143 0.073434 0.001500 0.005961 1.076640 0.891031 8.966190e-01 0.006772 0.010287 0.001055 1.027366 0.074091 0.044947 0.001331 1.200953 0.026845 0.029044 0.043541 0.034587 0.038444
10 class Gammaproteobacteria 0.005263 0.010073 0.059140 0.002521 0.013209 0.083744 0.016540 4.422819e-02 0.003075 0.054723 0.019118 0.004724 0.047240 0.007020
11 order Xanthomonadales 0.009124 0.004681 0.001536 0.002540
12 family Rhodanobacteraceae 0.004681 0.001536
13 genus Rhodanobacter 0.001536
14 genus Rudaea 0.004681
15 family Xanthomonadaceae 0.006836 0.002540
16 genus Xanthomonas 0.002270
17 genus Pseudoxanthomonas 0.002288
18 genus Unclassified Xanthomonadaceae 0.002279 0.002540
19 family Unclassified Xanthomonadales 0.002288
20 order Cellvibrionales 0.000788
21 family Cellvibrionaceae 0.000788
22 genus Cellvibrio 0.000788
23 order Thiotrichales 0.009748
24 family Thiotrichaceae 0.009748
25 genus Thiothrix 0.009748
26 order Pseudomonadales 0.029371 0.061642 4.422819e-02 0.027506 0.035562
27 family Pseudomonadaceae 0.026926 0.061642 4.422819e-02 0.023773 0.035562
28 genus Pseudomonas 0.016488 0.056768 2.948546e-02 0.021321 0.032088
29 species Pseudomonas sp. M47T1 0.003494
30 species Unclassified Pseudomonas 0.016488 0.056768 2.948546e-02 0.021321 0.028594
31 genus Unclassified Pseudomonadaceae 0.010439 0.004874 1.474273e-02 0.002452 0.003473
32 family Unclassified Pseudomonadales 0.002445 0.003734
33 order Enterobacterales 0.005263 0.003361 0.001190 0.002521 0.005688 0.003936 0.011345 0.014774 0.003936 0.003510
34 family Erwiniaceae 0.001260 0.002479 0.001737
35 genus Pantoea 0.001260
36 genus Erwinia 0.002479 0.001737
37 species Erwinia billingiae 0.002479 0.000868
38 species Unclassified Erwinia 0.000868
39 family Yersiniaceae 0.003361 0.000784 0.000784 0.000784
40 genus Rahnella 0.003361
41 genus Unclassified Yersiniaceae 0.000784 0.000784 0.000784
42 family Unclassified Enterobacterales 0.005263 0.001190 0.001260 0.005688 0.003151 0.008082 0.013038 0.003151 0.003510
43 order Unclassified Gammaproteobacteria 0.006712 0.018667 0.007521 0.007673 0.012605 0.001538 0.013332 0.004344 0.000789 0.011679 0.003510
44 class Alphaproteobacteria 0.003439 0.241106 0.002958 0.001249 0.238816 0.277996 2.488759e-01 0.001055 0.249402 0.020565 0.216927 0.015116 0.003172 0.038444
45 order Rhodospirillales 0.002988 4.276337e-03 0.004730 0.001724
46 family Acetobacteraceae 4.276337e-03 0.001724
47 genus Roseomonas 0.001724
48 genus Unclassified Acetobacteraceae 4.276337e-03
49 genus Reyranella 0.001494 0.001494
50 species Reyranella massiliensis 0.001494 0.001494
51 family Unclassified Rhodospirillales 0.001494 0.003236
52 order Rhodobacterales 0.001210 0.002958 0.001055 0.001273 0.008709
53 family Rhodobacteraceae 0.001210 0.002958 0.001055 0.001273 0.001744
54 genus Paracoccus 0.001210 0.002958 0.001055
55 species Paracoccus yeei 0.001210 0.002958
56 species Paracoccus denitrificans 0.001055
57 genus Unclassified Rhodobacteraceae 0.001273 0.001744
58 family Unclassified Rhodobacterales 0.006965
59 order Sphingomonadales 0.172784 0.237920 0.175548 0.015653
60 family Sphingomonadaceae 0.147110 0.225203 0.124438 0.012175
61 genus Sphingomonas 0.069649 0.106471 0.057210
62 species Sphingomonas taxi 0.001218
63 species Sphingomonas panacis 0.013451 0.057672 0.007468
64 species Unclassified Sphingomonas 0.054980 0.048799 0.049742
65 genus Sphingorhabdus 0.001251
66 genus Novosphingobium 0.003243 0.008742 0.001246 0.001739
67 genus Unclassified Sphingomonadaceae 0.074218 0.109990 0.064731 0.010436
68 family Unclassified Sphingomonadales 0.025675 0.012716 0.051110 0.003479
69 order Caulobacterales 0.001269
70 family Caulobacteraceae 0.001269
71 order Rhizobiales 0.003439 0.025048 0.001249 0.075152 3.354286e-02 0.002554 0.011334 0.059074 0.011740 0.038444
72 family Methylobacteriaceae 0.002346 0.007168 7.167934e-03 0.004498 0.003327 0.001831
73 genus Methylobacterium 0.003449 3.448777e-03 0.004498 0.003327 0.001831
74 genus Unclassified Methylobacteriaceae 0.002346 0.003719 3.719157e-03
75 family Methylocystaceae 0.001555
76 genus Methylocystis 0.000778
77 genus Unclassified Methylocystaceae 0.000778
78 family Xanthobacteraceae 0.001167
79 genus Starkeya 0.001167
80 species Starkeya novella 0.001167
81 family Bradyrhizobiaceae 0.008157 0.001249 0.011751 6.877553e-03 0.001273 0.004563 0.005218 0.001680 0.005497
82 genus Rhodopseudomonas 0.004874
83 species Rhodopseudomonas palustris 0.004874
84 genus Bradyrhizobium 0.001273 0.002290 0.001742 0.001680 0.005497
85 genus Unclassified Bradyrhizobiaceae 0.008157 0.001249 0.006878 6.877553e-03 0.002272 0.003476
86 family Hyphomicrobiaceae 0.002366 0.008182 0.003473 0.003644
87 genus Rhodoplanes 0.001185
88 genus Hyphomicrobium 0.001181 0.004091
89 species Hyphomicrobium sp. 99 0.001181
90 species Unclassified Hyphomicrobium 0.004091
91 genus Unclassified Hyphomicrobiaceae 0.004091 0.003473 0.003644
92 family Beijerinckiaceae 0.002367 0.001281 0.001856
93 family Bartonellaceae 0.003439
94 genus Bartonella 0.003439
95 family Rhizobiaceae 0.043865 0.027793
96 genus Ensifer 0.001737
97 genus Rhizobium 0.009748
98 genus Unclassified Rhizobiaceae 0.034117 0.026056
99 family Unclassified Rhizobiales 0.007087 0.004186 1.949737e-02 0.002272 0.022590 0.006733 0.025616
100 order Unclassified Alphaproteobacteria 0.042063 0.160676 0.040076 2.110567e-01 0.068759 0.009232 0.128761 0.001652 0.003172
101 class Betaproteobacteria 0.004504 0.022638 0.034880 0.253227 0.005038 0.024447 0.003974 0.338198 0.465684 3.349385e-01 0.002031 0.344939 0.035773 0.011244 0.399513 0.029044 0.039195 0.020906
102 order Neisseriales 0.001166 0.032012
103 family Chromobacteriaceae 0.001166 0.018293
104 genus Jeongeupia 0.004573
105 genus Unclassified Chromobacteriaceae 0.001166 0.013719
106 family Unclassified Neisseriales 0.013719
107 order Rhodocyclales 0.014622
108 family Zoogloeaceae 0.009748
109 genus Thauera 0.009748
110 family Unclassified Rhodocyclales 0.004874
111 order Nitrosomonadales 0.005082 0.004944 0.002501
112 family Sterolibacteriaceae 0.001161
113 family Methylophilaceae 0.003922 0.004944 0.002501
114 genus Methylotenera 0.002323 0.001274
115 genus Unclassified Methylophilaceae 0.001598 0.004944 0.001227
116 order Burkholderiales 0.004504 0.018907 0.010377 0.174827 0.005038 0.007537 0.211887 0.333194 1.958710e-01 0.240704 0.006889 0.011244 0.279584 0.029044 0.039195 0.010448
117 family Burkholderiaceae 0.004504 0.007583 0.006918 0.085351 0.001258 0.003772 0.087729 0.135099 9.337062e-02 0.043687 0.001754 0.002264 0.081894 0.029044 0.026141 0.003489
118 genus Cupriavidus 0.004874 0.024823 0.001228
119 genus Paraburkholderia 0.003731 0.003152 0.001285
120 species Paraburkholderia caribensis 0.002369
121 species Unclassified Paraburkholderia 0.003731 0.000783 0.001285
122 genus Burkholderia 0.008573 0.004339 0.021783
123 genus Polynucleobacter 0.001744
124 genus Ralstonia 0.001156 0.004874 0.008873
125 species Ralstonia insidiosa 0.004874
126 species Unclassified Ralstonia 0.001156 0.008873
127 genus Unclassified Burkholderiaceae 0.004504 0.003852 0.006918 0.072470 0.001258 0.003772 0.077982 0.097064 9.337062e-02 0.041174 0.001754 0.002264 0.080149 0.007261 0.026141 0.003489
128 genus Methylibium 0.004834
129 family Alcaligenaceae 0.004012 0.002286
130 genus Orrella 0.001605
131 genus Unclassified Alcaligenaceae 0.002407 0.002286
132 family Oxalobacteraceae 0.009327 0.039256 0.008617 3.439970e-02 0.013657 0.002260 0.067994
133 genus Janthinobacterium 0.001173 0.012213 0.005241
134 genus Herminiimonas 0.001243
135 genus Duganella 0.004609
136 genus Herbaspirillum 0.001161
137 genus Unclassified Oxalobacteraceae 0.006993 0.022435 0.008617 3.439970e-02 0.012414 0.002260 0.062754
138 family Comamonadaceae 0.003334 0.009748 0.004863 4.914243e-03 0.013639 0.001732 0.003469
139 genus Rhodoferax 0.002487 0.001732
140 species Rhodoferax koreense 0.001732
141 species Unclassified Rhodoferax 0.002487
142 genus Variovorax 0.002483
143 genus Polaromonas 0.004874
144 species Polaromonas sp. CF318 0.004874
145 genus Unclassified Comamonadaceae 0.003334 0.004874 0.004863 4.914243e-03 0.008669 0.003469
146 family Unclassified Burkholderiales 0.011324 0.003459 0.072802 0.003780 0.003766 0.070320 0.184615 6.318645e-02 0.169720 0.005135 0.004435 0.127964 0.013054 0.003489
147 order Unclassified Betaproteobacteria 0.003731 0.024503 0.072151 0.016910 0.003974 0.111690 0.095534 1.390675e-01 0.002031 0.101735 0.028884 0.119929 0.010458
148 class Deltaproteobacteria 0.019449 1.944911e-02 0.003468
149 order Myxococcales 0.009786 9.786259e-03 0.001734
150 order Unclassified Deltaproteobacteria 0.009663 9.662849e-03 0.001734
151 class Unclassified Proteobacteria 0.014811 0.272205 0.016336 0.035778 0.001500 0.001987 0.396433 0.130810 2.491273e-01 0.001666 0.010287 0.378301 0.019200 0.008414 0.001331 0.533805 0.011729 0.004346 0.003489
152 phylum Firmicutes 1.965697e-02 0.013861
153 class Clostridia 1.965697e-02
154 order Clostridiales 1.474273e-02
155 family Ruminococcaceae 4.914243e-03
156 family Unclassified Clostridiales 9.828487e-03
157 order Unclassified Clostridia 4.914243e-03
158 class Bacilli 0.010405
159 order Bacillales 0.006937
160 order Unclassified Bacilli 0.003468
161 class Unclassified Firmicutes 0.003456
162 phylum Deinococcus-Thermus 0.002450
163 class Deinococci 0.001214
164 class Unclassified Deinococcus-Thermus 0.001236
165 phylum Chloroflexi 0.017311
166 class Ktedonobacteria 0.003453
167 order Ktedonobacterales 0.003453
168 family Ktedonobacteraceae 0.001727
169 family Unclassified Ktedonobacterales 0.001727
170 class Caldilineae 0.005203
171 order Caldilineales 0.001734
172 family Caldilineaceae 0.001734
173 order Unclassified Caldilineae 0.003468
174 class Unclassified Chloroflexi 0.008656
175 phylum Actinobacteria 0.046034 0.043890 0.050293 2.457122e-02 0.067299 0.001845 0.002662 0.046483
176 class Actinobacteria 0.034348 0.035010 0.040934 2.457122e-02 0.049158 0.001845 0.001328 0.036293
177 order Micrococcales 0.001445 0.012922 2.457122e-02 0.012188 0.003491
178 family Micrococcaceae 0.001445
179 genus Glutamicibacter 0.001445
180 family Microbacteriaceae 0.008615 2.457122e-02 0.002326 0.001747
181 genus Agromyces 0.001208
182 genus Frondihabitans 0.008615 1.965697e-02
183 genus Unclassified Microbacteriaceae 4.914243e-03 0.001118 0.001747
184 family Unclassified Micrococcales 0.004307 0.009862 0.001744
185 order Corynebacteriales 0.013903 0.012945 0.003728 0.003458
186 family Mycobacteriaceae 0.003466 0.008255 0.002460
187 genus Mycobacterium 0.001266
188 genus Unclassified Mycobacteriaceae 0.003466 0.008255 0.001194
189 family Nocardiaceae 0.004818
190 family Gordoniaceae 0.000799
191 family Unclassified Corynebacteriales 0.004820 0.004690 0.001267 0.003458
192 order Propionibacteriales 0.004538
193 family Nocardioidaceae 0.004538
194 order Pseudonocardiales 0.001500
195 order Streptomycetales 0.000807
196 family Streptomycetaceae 0.000807
197 genus Streptomyces 0.000807
198 order Unclassified Actinobacteria 0.016694 0.022088 0.023451 0.033243 0.001845 0.001328 0.029344
199 class Unclassified Actinobacteria 0.011686 0.008881 0.009360 0.018141 0.001334 0.010189
200 phylum Planctomycetes 0.001434 0.007314 0.009659 3.215045e-03 0.014004 0.007952 0.010545
201 class Planctomycetia 0.001434 0.004290 0.004290 0.004664 0.003658
202 order Planctomycetales 0.001434 0.002159 0.002159 0.003109 0.003658
203 family Planctomycetaceae 0.001079 0.001079
204 genus Gimesia 0.001079 0.001079
205 family Isosphaeraceae 0.001555
206 family Unclassified Planctomycetales 0.001434 0.001079 0.001079 0.001555 0.003658
207 order Unclassified Planctomycetia 0.002131 0.002131 0.001555
208 class Phycisphaerae 0.005062
209 order Phycisphaerales 0.005062
210 family Phycisphaeraceae 0.005062
211 class Unclassified Planctomycetes 0.007314 0.005369 3.215045e-03 0.009714 0.003288 0.001825
212 phylum Spirochaetes 0.001249
213 phylum Lentisphaerae 0.012499
214 phylum Acidobacteria 0.073151 0.131851 0.079211
215 class Acidobacteriia 0.067630 0.086804 0.075855
216 order Acidobacteriales 0.063405 0.083463 0.075855
217 family Acidobacteriaceae 0.063405 0.075138 0.063985
218 genus Terriglobus 0.006969 0.001666
219 species Terriglobus roseus 0.001394
220 species Unclassified Terriglobus 0.005575 0.001666
221 genus Granulicella 0.037073 0.043425 0.025166
222 species Granulicella mallensis 0.005479
223 species Unclassified Granulicella 0.031594 0.043425 0.025166
224 genus Unclassified Acidobacteriaceae 0.019363 0.030046 0.038819
225 family Unclassified Acidobacteriales 0.008325 0.011870
226 order Unclassified Acidobacteriia 0.004225 0.003341
227 class Unclassified Acidobacteria 0.005521 0.045047 0.003356
228 phylum Armatimonadetes 0.004246 0.001280
229 class Chthonomonadetes 0.004246
230 class Unclassified Armatimonadetes 0.001280
231 phylum Verrucomicrobia 0.001384 0.004283 0.003414 0.008421 0.004899
232 class Spartobacteria 0.004283
233 order Chthoniobacterales 0.004283
234 family Chthoniobacteraceae 0.004283
235 genus Chthoniobacter 0.004283
236 class Verrucomicrobiae 0.001687
237 order Verrucomicrobiales 0.001687
238 family Verrucomicrobia subdivision 3 0.001687
239 genus Pedosphaera 0.001687
240 class Opitutae 0.003212
241 order Opitutales 0.003212
242 class Unclassified Verrucomicrobia 0.001384 0.003414 0.008421
243 phylum Bacteroidetes 0.044687 0.001356 0.016272 0.012926 1.798414e-02 0.001509 0.038852 0.067150 0.005911
244 order Bacteroidetes Order II. Incertae sedis 0.005911
245 family Rhodothermaceae 0.005911
246 genus Rhodothermus 0.003731
247 genus Unclassified Rhodothermaceae 0.002181
248 class Flavobacteriia 0.007386 0.008748 0.017291
249 order Flavobacteriales 0.007386 0.008748 0.013833
250 family Flavobacteriaceae 0.007386 0.008748 0.003458
251 genus Flavobacterium 0.007386 0.008748
252 species Flavobacterium gilvum 0.001251
253 species Unclassified Flavobacterium 0.007386 0.007497
254 genus Unclassified Flavobacteriaceae 0.003458
255 family Unclassified Flavobacteriales 0.010375
256 order Unclassified Flavobacteriia 0.003458
257 class Sphingobacteriia 0.013838 0.004099 0.004307 0.015075 0.008442
258 order Sphingobacteriales 0.012917 0.004099 0.010047 0.008442
259 family Sphingobacteriaceae 0.011071 0.004099 0.010047 0.006814
260 genus Mucilaginibacter 0.001844 0.004099 0.005027 0.003458
261 genus Unclassified Sphingobacteriaceae 0.009227 0.005019 0.003356
262 family Unclassified Sphingobacteriales 0.001845 0.001627
263 order Unclassified Sphingobacteriia 0.000922 0.004307 0.005029
264 class Chitinophagia 0.000917 0.001509 0.002496
265 order Chitinophagales 0.000917 0.001509 0.002496
266 family Chitinophagaceae 0.000917 0.001509
267 genus Flavisolibacter 0.001509
268 genus Unclassified Chitinophagaceae 0.000917
269 family Unclassified Chitinophagales 0.002496
270 class Cytophagia 0.000920 0.004403 0.008666
271 order Cytophagales 0.000920 0.004403 0.008666
272 family Cytophagaceae 0.000920 0.004403
273 genus Spirosoma 0.004403
274 genus Cytophaga 0.000920
275 species Cytophaga aurantiaca 0.000920
276 family Unclassified Cytophagales 0.008666
277 class Unclassified Bacteroidetes 0.021626 0.001356 0.012173 0.004216 1.798414e-02 0.012533 0.032751
278 phylum Unclassified Bacteria 0.278348 0.004444 0.445624 0.057356 4.118763e-01 0.007004 0.202109 0.002897 0.001352 0.981535 0.099029 0.025912
279 superkingdom Archaea 0.001742
280 phylum Euryarchaeota 0.001742
281 class Halobacteria 0.001742
282 superkingdom Unclassified 0.009374 2.220446e-16 0.012433
Functionefpkg Raw sequence count Amino acid identity %, average Description
NapA 0.02048 12 89.56 Periplasmic nitrate reductase precursor (EC 1.7.99.4)
NapD 0.01449 2 81.60 Periplasmic nitrate reductase component NapD
NapE 0.00978 1 77.50 Periplasmic nitrate reductase component NapE
NapF 0.01179 2 71.80 Ferredoxin-type protein NapF (periplasmic nitrate reductase)
NarG_NxrA 0.02594 22 93.53 narG, narZ, nxrA; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
NarH_NxrB 0.03933 15 85.10 narH, narY, nxrB; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
NarI 0.05300 11 86.46 Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
NarJ 0.04299 9 81.49 narJ, narW; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
NasA 2.09904 1520 80.03 Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
NasB 0.44008 152 75.50 nasB; assimilatory nitrate reductase NADH oxidase subunit [EC:1.7.99.-]
NifB 0.00757 3 98.07 nifB; nitrogen fixation protein NifB
NifD_AnfD_VnfD 0.00264 1 100.00 Nitrogenase alpha chain (EC 1.18.6.1) NifD/AnfD/VnfD
NifH_AnfH_VnfH 0.01199 3 100.00 Nitrogenase reductase and maturation protein NifH/AnfH/VnfH
NifK_AnfK_VnfK 0.00515 2 97.85 Nitrogenase beta chain (EC 1.18.6.1) NifK/AnfK/VnfK
NirA 0.58682 257 75.71 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]
NirB 1.91215 1130 85.45 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
NirD 1.46719 228 77.70 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
NirK 0.02523 9 71.26 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
NirN 0.00794 3 62.50 Nitrite reductase associated c-type cytochorome NirN
NirU 0.43522 176 77.01 assimilatory nitrite reductase, putative NADH oxidase subunit [EC:1.7.99.-]
NosZ 0.00773 4 86.22 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
NrfA 0.00273 1 94.00 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
UreA 1.82077 296 87.95 ureA; urease subunit gamma [EC:3.5.1.5]
UreB 2.17945 338 82.76 ureB; urease subunit beta [EC:3.5.1.5]
UreC 3.24362 1371 90.13 ureC; urease subunit alpha [EC:3.5.1.5]
cNor-C 0.00473 1 51.40 Nitric-oxide reductase subunit C (EC 1.7.99.7)
cNorB_qNor 0.00181 1 66.00 Nitric-oxide reductase (EC 1.7.99.7)
Function categoryefpkg Raw sequence count Amino acid identity %, average
Ammonification 0.00273 1 94.00
Denitrification 0.04744 18 71.73
Nitrate assimilatory reduction 2.53912 1672 79.62
Nitrate dissimilatory reduction 0.21781 74 87.54
Nitrite assimilation 4.40138 1791 82.24
Nitrogen fixation 0.02736 9 98.88
Urease 7.24385 2005 88.57
NapD NarJ NasA NifH_AnfH_VnfH NapA NarH_NxrB NifK_AnfK_VnfK NirN NifD_AnfD_VnfD UreB NapF NirD UreA NirK cNor-C NosZ NirB NasB NarG_NxrA cNorB_qNor UreC NirA NapE NrfA NarI NifB NirU
Rank Taxon name efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg efpkg
1 norank root 0.014489 0.042995 2.099036 0.011995 0.020476 0.039327 0.005150 0.007936 0.002641 2.179454 0.011793 1.467193e+00 1.820773 0.025233 0.004728 0.007731 1.912145 0.440082 0.025941 0.001812 3.243621 0.586820 0.009782 0.002727 0.053003 0.007570 0.435221
2 norank Unknown 0.003329 0.032591 0.022683 0.030764
3 superkingdom Bacteria 0.014489 0.042995 2.099036 0.011995 0.020476 0.035999 0.005150 0.007936 0.002641 2.114645 0.011793 1.459473e+00 1.798090 0.025233 0.004728 0.007731 1.912145 0.440082 0.025941 0.001812 3.205715 0.586820 0.009782 0.002727 0.053003 0.007570 0.435221
4 phylum Cyanobacteria 0.006523 1.433218e-02 0.001705 0.004686
5 order Oscillatoriales 0.002343
6 family Oscillatoriaceae 0.002343
7 order Synechococcales 0.006523 1.433218e-02
8 family Chamaesiphonaceae 0.006523 1.433218e-02
9 genus Chamaesiphon 7.166088e-03
10 genus Unclassified Chamaesiphonaceae 0.006523 7.166088e-03
11 class Unclassified Cyanobacteria 0.001705 0.002343
12 phylum Proteobacteria 0.014489 0.042995 1.281543 0.003985 0.020476 0.033413 0.005150 0.007936 1.309355 0.011793 8.979162e-01 1.026352 0.013161 0.004728 0.005690 1.128132 0.401103 0.025941 1.607337 0.204823 0.009782 0.053003 0.007570 0.194771
13 class Gammaproteobacteria 0.013895 0.103581 0.001713 0.005098 0.100937 5.995643e-02 0.068326 0.069695 0.017243 0.005890 0.103298
14 order Chromatiales 0.001596 0.007297 0.005138
15 family Ectothiorhodospiraceae 0.001596 0.001716
16 family Unclassified Chromatiales 0.007297 0.003422
17 order Xanthomonadales 0.009616 0.011889
18 family Rhodanobacteraceae 0.004842 0.011889
19 genus Frateuria 0.011889
20 species Frateuria aurantia 0.002378
21 species Unclassified Frateuria 0.009511
22 genus Rhodanobacter 0.001614
23 genus Unclassified Rhodanobacteraceae 0.003228
24 family Xanthomonadaceae 0.004774
25 genus Lysobacter 0.001591
26 genus Unclassified Xanthomonadaceae 0.003183
27 order Methylococcales 0.002667 0.001680
28 family Methylococcaceae 0.002667
29 genus Methylomonas 0.001601
30 genus Unclassified Methylococcaceae 0.001066
31 family Unclassified Methylococcales 0.001680
32 order Oceanospirillales 0.006218
33 order Vibrionales 0.001595
34 family Vibrionaceae 0.001595
35 genus Enterovibrio 0.001595
36 order Nevskiales 0.007538 0.001664
37 family Sinobacteraceae 0.007538 0.001664
38 order Pseudomonadales 0.037424 0.064847 2.386363e-02 0.047371 0.026839 0.005602 0.061737
39 family Pseudomonadaceae 0.030670 0.064847 1.426847e-02 0.047371 0.023500 0.003109 0.061737
40 genus Pseudomonas 0.016048 0.057126 7.166088e-03 0.034129 0.016755 0.003109 0.033324
41 genus Unclassified Pseudomonadaceae 0.014621 0.007720 7.102379e-03 0.013241 0.006745 0.028412
42 family Moraxellaceae 2.492784e-03 0.002493
43 family Unclassified Pseudomonadales 0.006755 7.102379e-03 0.003339
44 order Enterobacterales 0.013895 0.010949 0.001713 0.002505 4.276690e-03 0.008391 0.004277 0.004713
45 family Erwiniaceae 1.061678e-03 0.004386 0.001062
46 genus Pantoea 0.001640
47 genus Erwinia 0.001684
48 species Erwinia billingiae 0.001684
49 genus Unclassified Erwiniaceae 1.061678e-03 0.001062 0.001062
50 family Pectobacteriaceae 0.007716
51 genus Brenneria 0.005542
52 genus Unclassified Pectobacteriaceae 0.002174
53 family Yersiniaceae 0.001606
54 genus Rahnella 0.001606
55 family Unclassified Enterobacterales 0.013895 0.001627 0.001713 0.002505 3.215013e-03 0.004005 0.003215 0.004713
56 order Unclassified Gammaproteobacteria 0.039733 0.002594 0.022335 3.181611e-02 0.013658 0.025982 0.007365 0.001177 0.029673
57 class Alphaproteobacteria 0.004887 0.332251 0.003985 0.001707 0.002624 0.002561 0.434810 0.011793 3.925924e-01 0.443515 0.007757 0.004258 0.324285 0.179351 0.001182 0.472721 0.159636 0.182287
58 order Rhodospirillales 0.013787 0.006945 0.007123 0.007049 0.024766
59 family Acetobacteraceae 0.013787 0.003477 0.004749 0.007049 0.007444
60 genus Roseomonas 0.007049
61 genus Saccharibacter 0.002374
62 genus Acidiphilium 0.003477
63 genus Unclassified Acetobacteraceae 0.013787 0.002374 0.007444
64 family Unclassified Rhodospirillales 0.003468 0.002374 0.017322
65 order Rhodobacterales 0.004887 0.006566 0.004707
66 family Rhodobacteraceae 0.004887 0.006566 0.002336
67 family Unclassified Rhodobacterales 0.002371
68 order Sphingomonadales 0.086777 3.272017e-01 0.007757 0.184037 0.011854
69 family Sphingomonadaceae 0.070817 2.909515e-01 0.007757 0.116631 0.007112
70 genus Sphingomonas 0.013281 2.199142e-02 0.006765
71 species Sphingomonas panacis 0.001661 7.330474e-03 0.001691
72 species Unclassified Sphingomonas 0.011620 1.466095e-02 0.005074
73 genus Sphingorhabdus 1.459399e-02 0.001700
74 genus Blastomonas 7.364260e-03
75 genus Sphingobium 7.039794e-03
76 genus Novosphingobium 0.003270 5.821010e-02 0.018388
77 species Novosphingobium nitrogenifigens 0.002180
78 species Unclassified Novosphingobium 0.001090 5.821010e-02 0.018388
79 genus Sphingopyxis 0.001647
80 genus Unclassified Sphingomonadaceae 0.052619 1.817519e-01 0.007757 0.089778 0.007112
81 family Unclassified Sphingomonadales 0.015960 3.625018e-02 0.067405 0.004741
82 order Caulobacterales 0.012783 1.383433e-02 0.020707
83 family Caulobacteraceae 0.011161 1.383433e-02 0.013799
84 genus Caulobacter 0.003191
85 genus Unclassified Caulobacteraceae 0.007970 1.383433e-02 0.013799
86 family Unclassified Caulobacterales 0.001622 0.006908
87 order Rhizobiales 0.128914 0.002561 0.173455 0.011793 1.493503e-02 0.106115 0.002119 0.008673 0.154181 0.205889 0.139412 0.157522
88 family Methylobacteriaceae 0.001598 0.043185 0.043185 0.014203 0.002279
89 genus Methylobacterium 0.001598 0.009512 0.009512 0.004734 0.002279
90 genus Unclassified Methylobacteriaceae 0.033673 0.033673 0.009469
91 family Chelatococcaceae 0.011793
92 genus Chelatococcus 0.011793
93 family Aurantimonadaceae 0.001167
94 genus Martelella 0.001167
95 family Bradyrhizobiaceae 0.054057 0.002561 0.040167 0.037845 0.002119 0.056506 0.061502 0.059198 0.067387
96 genus Bradyrhizobium 0.009554 0.002561 0.004742 0.004742 0.012530 0.002374 0.034209 0.014976
97 species Bradyrhizobium sp. S23321 0.002561
98 species Unclassified Bradyrhizobium 0.009554 0.004742 0.004742 0.012530 0.002374 0.034209 0.014976
99 genus Unclassified Bradyrhizobiaceae 0.044503 0.035425 0.033103 0.002119 0.043976 0.059128 0.024989 0.052411
100 family Hyphomicrobiaceae 0.003209 0.003127 0.007102 0.002485
101 genus Hyphomicrobium 0.004734 0.002485
102 genus Unclassified Hyphomicrobiaceae 0.003209 0.003127 0.002367
103 family Beijerinckiaceae 0.006430 0.025313 0.002309 0.017710
104 genus Methyloferula 0.006328
105 genus Unclassified Beijerinckiaceae 0.006430 0.018985 0.002309 0.017710
106 family Phyllobacteriaceae 0.003235 7.467514e-03 0.001735 0.002367
107 genus Aminobacter 0.002367
108 genus Mesorhizobium 0.003235 7.467514e-03 0.001735
109 family Rhizobiaceae 0.065663 7.467514e-03 0.001735 0.014207
110 family Unclassified Rhizobiales 0.059219 0.024440 0.025085 0.005203 0.069234 0.106508 0.075626 0.069939
111 order Unclassified Alphaproteobacteria 0.103777 0.003985 0.001707 0.002624 0.254789 3.662137e-02 0.323613 0.002139 0.103924 0.025171 0.001182 0.243149 0.013174
112 class Betaproteobacteria 0.007398 0.024213 0.333704 0.003422 0.010243 0.179085 3.099930e-01 0.152275 0.002750 0.316889 0.097802 0.014149 0.253270 0.002309 0.009782 0.038505 0.005009
113 order Neisseriales 0.001584 1.493503e-02
114 family Chromobacteriaceae 0.001584
115 family Unclassified Neisseriales 1.493503e-02
116 order Rhodocyclales 0.001570 0.019699 0.004749
117 family Zoogloeaceae 0.019699 0.004749
118 genus Thauera 0.006566
119 genus Uliginosibacterium 0.002374
120 genus Unclassified Zoogloeaceae 0.013133 0.002374
121 family Unclassified Rhodocyclales 0.001570
122 order Nitrosomonadales 0.009038 0.015440 7.646193e-03 0.006621 0.012207 0.011885
123 family Thiobacillaceae 0.001625
124 family Nitrosomonadaceae 0.002374
125 family Methylophilaceae 0.007412 0.015440 7.646193e-03 0.006621 0.012207 0.007133
126 genus Methylophilus 0.001083
127 genus Unclassified Methylophilaceae 0.006330 0.015440 7.646193e-03 0.006621 0.012207 0.007133
128 family Unclassified Nitrosomonadales 0.002378
129 order Burkholderiales 0.007398 0.024213 0.208748 0.003422 0.005142 0.054585 1.887400e-01 0.059586 0.002750 0.191343 0.079545 0.005865 0.161050 0.009782 0.009626
130 family Burkholderiaceae 0.007398 0.009627 0.043148 0.001714 0.026265 7.753322e-02 0.026483 0.028929 0.003109 0.001159 0.073595 0.009782
131 genus Paraburkholderia 0.004784 0.001536 0.001159
132 species Paraburkholderia kururiensis 0.001536
133 species Unclassified Paraburkholderia 0.004784 0.001159
134 genus Burkholderia 0.004842 0.005284 0.006566 2.046321e-02 0.003477 0.009782
135 genus Ralstonia 7.330474e-03
136 genus Pandoraea 0.001536
137 genus Unclassified Burkholderiaceae 0.007398 0.034791 0.001714 0.019699 4.973954e-02 0.026483 0.025452 0.003109 0.073595
138 genus Thiomonas 0.007720
139 species Thiomonas sp. FB-6 0.007720
140 family Alcaligenaceae 0.011593 0.001707 1.446190e-02 0.003127
141 genus Orrella 0.001087
142 genus Unclassified Alcaligenaceae 0.010506 0.001707 1.446190e-02 0.003127
143 family Oxalobacteraceae 0.004842 0.020463 7.198372e-03 0.002750 0.010016 0.006175 0.011903
144 genus Janthinobacterium 0.001596
145 genus Duganella 0.001568 0.003091
146 genus Herbaspirillum 0.004721
147 genus Unclassified Oxalobacteraceae 0.004842 0.012577 7.198372e-03 0.002750 0.010016 0.003085 0.011903
148 family Comamonadaceae 0.020788 0.007468 6.686280e-03 0.005216 0.014072
149 genus Variovorax 0.001542 6.686280e-03 0.001733 0.002360
150 genus Hydrogenophaga 0.001550
151 genus Unclassified Comamonadaceae 0.017696 0.007468 0.003483 0.011712
152 genus Roseateles 0.001698
153 family Unclassified Burkholderiales 0.009744 0.112756 0.005142 0.013133 8.286019e-02 0.033103 0.145484 0.067134 0.004706 0.061480 0.009626
154 order Unclassified Betaproteobacteria 0.112765 0.005101 0.089361 9.867179e-02 0.086069 0.113339 0.018256 0.008284 0.075587 0.002309 0.028879 0.005009
155 class Deltaproteobacteria 0.001854 0.004378 0.004378
156 class Unclassified Proteobacteria 0.007091 0.510154 0.013635 0.015448 0.002590 0.007936 0.590146 1.353744e-01 0.357858 0.002654 0.004728 0.001432 0.417262 0.106707 0.004720 0.778048 0.042878 0.014498 0.002561 0.012484
157 phylum Firmicutes 0.001698 0.007077 0.007463
158 class Bacilli 0.004710
159 class Unclassified Firmicutes 0.001698 0.002367 0.007463
160 phylum Chloroflexi 0.018837
161 class Ktedonobacteria 0.004707
162 order Ktedonobacterales 0.004707
163 family Ktedonobacteraceae 0.004707
164 class Unclassified Chloroflexi 0.014130
165 phylum Actinobacteria 0.216094 0.298715 3.167372e-01 0.244048 0.383450 0.025366 0.391597
166 class Actinobacteria 0.193005 0.253995 2.983788e-01 0.201050 0.346732 0.022573 0.338335
167 order Nakamurellales 0.002378
168 family Nakamurellaceae 0.002378
169 genus Nakamurella 0.002378
170 order Micrococcales 0.001808 0.006907 6.858484e-03 0.004887 0.004836 0.002364
171 family Micrococcaceae 6.858484e-03 0.002364
172 genus Arthrobacter 6.858484e-03
173 genus Kocuria 0.002364
174 species Kocuria rhizophila 0.002364
175 family Unclassified Micrococcales 0.001808 0.006907 0.004887 0.004836
176 order Corynebacteriales 0.138032 0.123317 2.134050e-01 0.029756 0.214625 0.141732
177 family Mycobacteriaceae 0.099635 0.065862 1.645279e-01 0.011568 0.106313 0.040265
178 genus Mycobacterium 0.062013 0.015220 9.237122e-02 0.056118 0.004731
179 genus Unclassified Mycobacteriaceae 0.037622 0.050642 7.215667e-02 0.011568 0.050195 0.035534
180 family Nocardiaceae 0.005074 0.001700 0.009511
181 genus Nocardia 0.002990
182 genus Rhodococcus 0.001079 0.001700 0.009511
183 species Rhodococcus rhodnii 0.002378
184 species Unclassified Rhodococcus 0.001079 0.001700 0.007133
185 genus Unclassified Nocardiaceae 0.001004
186 family Unclassified Corynebacteriales 0.033323 0.057455 4.887707e-02 0.018189 0.106611 0.091956
187 order Micromonosporales 0.005362
188 order Propionibacteriales 1.377610e-02 0.005555 0.002378
189 family Nocardioidaceae 1.377610e-02 0.005555
190 genus Nocardioides 6.888051e-03 0.002828
191 genus Aeromicrobium 0.002727
192 genus Unclassified Nocardioidaceae 6.888051e-03
193 family Unclassified Propionibacteriales 0.002378
194 order Streptomycetales 0.003263 0.004819
195 family Streptomycetaceae 0.002181 0.002357
196 family Unclassified Streptomycetales 0.001082 0.002462
197 order Frankiales 7.102379e-03
198 order Unclassified Actinobacteria 0.049902 0.123772 5.723692e-02 0.166407 0.127271 0.011656 0.184665
199 class Unclassified Actinobacteria 0.023089 0.044720 1.835834e-02 0.042998 0.036718 0.002794 0.053262
200 phylum Planctomycetes 0.001839 1.019547e-02 0.011669 0.013407 0.021668
201 class Planctomycetia 0.001839 5.820331e-03 0.005820 0.002260 0.012472
202 order Planctomycetales 0.001839 2.929127e-03 0.002929 0.002260 0.012472
203 family Planctomycetaceae 2.929127e-03 0.002929
204 genus Gimesia 2.929127e-03 0.002929
205 family Gemmataceae 0.002489
206 family Unclassified Planctomycetales 0.001839 0.002260 0.009983
207 order Unclassified Planctomycetia 2.891204e-03 0.002891
208 class Phycisphaerae 0.009196
209 order Phycisphaerales 0.009196
210 class Unclassified Planctomycetes 4.375135e-03 0.005849 0.011147
211 phylum Spirochaetes 0.001238
212 phylum Lentisphaerae 0.006792
213 class Lentisphaeria 0.001698
214 class Unclassified Lentisphaerae 0.005094
215 phylum Acidobacteria 0.158947 0.102234 0.092441
216 class Acidobacteriia 0.128427 0.059103 0.087839
217 order Acidobacteriales 0.120915 0.054583 0.087839
218 family Acidobacteriaceae 0.101904 0.052307 0.055264
219 genus Terriglobus 0.009477 0.006809
220 species Terriglobus roseus 0.001895
221 species Unclassified Terriglobus 0.007582 0.006809
222 genus Granulicella 0.046934 0.022762 0.020687
223 species Granulicella mallensis 0.003725 0.002276 0.002286
224 species Unclassified Granulicella 0.043210 0.020485 0.018401
225 genus Unclassified Acidobacteriaceae 0.045493 0.022736 0.034577
226 family Unclassified Acidobacteriales 0.019010 0.002276 0.032576
227 order Unclassified Acidobacteriia 0.007512 0.004520
228 class Solibacteres 0.007682
229 order Solibacterales 0.007682
230 family Solibacteraceae 0.007682
231 class Unclassified Acidobacteria 0.022839 0.043131 0.004602
232 phylum Armatimonadetes 0.002451
233 phylum Verrucomicrobia 0.015117 0.023049 0.048434 0.103059 0.055088
234 class Spartobacteria 0.003519 0.011749 0.006887
235 order Chthoniobacterales 0.003519 0.011749 0.006887
236 family Chthoniobacteraceae 0.003519 0.009399 0.006887
237 genus Chthoniobacter 0.003519
238 genus Unclassified Chthoniobacteraceae 0.009399 0.006887
239 family Unclassified Chthoniobacterales 0.002350
240 class Verrucomicrobiae 0.011532 0.002367
241 order Verrucomicrobiales 0.011532
242 family Verrucomicrobia subdivision 3 0.009210
243 family Rubritaleaceae 0.002322
244 order Unclassified Verrucomicrobiae 0.002367
245 class Opitutae 0.005552 0.009223 0.033466 0.043537
246 order Opitutales 0.005552 0.009223 0.029003 0.038845
247 family Opitutaceae 0.005552 0.009223 0.024558 0.036549
248 genus Opitutus 0.001849 0.004611
249 genus Lacunisphaera 0.001854
250 genus Unclassified Opitutaceae 0.001849 0.004611 0.024558 0.036549
251 family Unclassified Opitutales 0.004445 0.002296
252 order Puniceicoccales 0.004693
253 order Unclassified Opitutae 0.004463
254 class Unclassified Verrucomicrobia 0.006045 0.023049 0.039212 0.046312 0.002296
255 phylum Bacteroidetes 0.176382 0.069845 1.324533e-01 0.072827 0.002727 0.172112 0.080129 0.018445
256 order Bacteroidetes Order II. Incertae sedis 0.015464
257 family Rhodothermaceae 0.015464
258 genus Rhodothermus 0.010309
259 genus Unclassified Rhodothermaceae 0.005155
260 class Flavobacteriia 0.003148 0.002727 0.006794
261 order Flavobacteriales 0.003148 0.002727
262 family Flavobacteriaceae 0.003148 0.002727
263 genus Flavobacterium 0.003148 0.002727
264 order Unclassified Flavobacteriia 0.006794
265 class Sphingobacteriia 0.044994 0.055826 7.659768e-02 0.013241 0.058071 0.040065
266 order Sphingobacteriales 0.043743 0.048848 6.976851e-02 0.013241 0.042709 0.035351
267 family Sphingobacteriaceae 0.041244 0.041870 6.257014e-02 0.013241 0.042709 0.035351
268 genus Mucilaginibacter 0.017497 0.034892 5.574097e-02 0.013241 0.030742 0.030638
269 species Mucilaginibacter paludis 0.013957 6.829170e-03 0.006621 0.004713
270 species Unclassified Mucilaginibacter 0.017497 0.020935 4.891180e-02 0.006621 0.030742 0.025924
271 genus Unclassified Sphingobacteriaceae 0.023747 0.006978 6.829170e-03 0.011966 0.004713
272 family Unclassified Sphingobacteriales 0.002500 0.006978 7.198372e-03
273 order Unclassified Sphingobacteriia 0.001250 0.006978 6.829170e-03 0.015362 0.004713
274 class Chitinophagia 0.016088 1.427074e-02 0.008469
275 order Chitinophagales 0.014845 7.039794e-03 0.001687
276 family Chitinophagaceae 0.014845 7.039794e-03 0.001687
277 genus Niastella 0.002445
278 genus Segetibacter 0.003727
279 genus Unclassified Chitinophagaceae 0.008673 7.039794e-03 0.001687
280 order Unclassified Chitinophagia 0.001242 7.230949e-03 0.006781
281 class Cytophagia 0.008655 0.007040 7.134091e-03 0.005069 0.002357
282 order Cytophagales 0.008655 0.007040 7.134091e-03 0.005069
283 family Hymenobacteraceae 0.003748
284 genus Rufibacter 0.002499
285 genus Unclassified Hymenobacteraceae 0.001249
286 family Flammeovirgaceae 0.001689
287 family Cytophagaceae 0.003659 0.007040 0.003380
288 family Unclassified Cytophagales 0.001248 7.134091e-03
289 order Unclassified Cytophagia 0.002357
290 class Unclassified Bacteroidetes 0.103497 0.006978 3.445077e-02 0.059586 0.093710 0.037708 0.002981
291 phylum Unclassified Bacteria 0.247876 0.008010 0.002586 0.002641 0.407158 8.783859e-02 0.454863 0.009345 0.002041 0.206586 0.013613 0.001812 1.047618 0.153383 0.002727 0.052807
292 superkingdom Archaea 7.720081e-03 0.002421
293 phylum Crenarchaeota 0.002421
294 class Thermoprotei 0.002421
295 phylum Unclassified Archaea 7.720081e-03
296 superkingdom Unclassified 0.032218 2.220446e-16 0.004720